Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.3e-224 782.7 389 100.0
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.3e-176 623.2 471 73.5
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 2.8e-171 605.5 465 70.5
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 6.3e-171 604.4 469 70.4
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 8.2e-171 604.0 469 70.4
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 1.8e-170 602.8 469 71.4
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 2.6e-169 599.0 469 69.9
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 2.6e-169 599.0 469 69.9
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 1.4e-165 586.6 469 67.8
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 7.0e-162 574.3 469 67.0
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.3e-160 570.1 478 66.7
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 6.5e-160 567.8 469 65.5
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.8e-157 559.7 454 67.4
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 6.8e-157 557.8 438 68.7
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 5.7e-148 528.1 501 60.1
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 3.7e-147 525.4 390 72.6
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.0e-141 507.3 474 62.4
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.0e-136 490.7 470 57.7
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 4.3e-135 485.3 468 55.1
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 7.3e-135 484.6 468 55.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 3.6e-134 482.3 468 55.1
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.3e-131 473.8 468 54.1
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.2e-131 473.0 466 54.7
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 2.9e-131 472.6 468 54.1
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 8.3e-131 471.1 468 53.6
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 5.1e-128 461.8 469 53.7
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 2.5e-127 459.5 468 53.6
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 3.3e-127 459.1 405 59.8
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 7.3e-127 458.0 408 58.3
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 9.5e-127 457.6 470 51.9
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 9.5e-127 457.6 465 52.9
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 5.2e-125 451.8 465 52.3
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 5.2e-125 451.8 468 52.6
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 8.9e-125 451.1 468 52.6
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 1.2e-124 450.7 469 52.9
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 1.7e-123 446.8 469 51.8
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 3.7e-123 445.7 468 52.4
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 3.7e-123 445.7 468 53.0
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 2.4e-122 443.0 468 50.9
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 2.4e-122 443.0 465 53.1
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 5.4e-122 441.8 408 58.3
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 5.4e-122 441.8 468 53.2
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.1e-121 439.9 469 51.4
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 3.5e-121 439.1 469 51.6
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 6.0e-121 438.3 469 51.4
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.0e-120 437.6 469 52.0
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 3.0e-120 436.0 465 51.6
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 5.1e-120 435.3 516 48.8
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.6e-120 434.5 483 52.0
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.6e-120 434.5 483 52.0
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.6e-120 434.5 483 52.0
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.9e-119 433.3 468 49.1
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 4.3e-119 432.2 516 48.6
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 7.3e-119 431.4 465 50.3
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 6.2e-118 428.3 468 52.8
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.1e-118 427.9 483 51.6
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.4e-117 427.2 468 50.0
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 4.0e-117 425.6 468 51.5
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.2e-116 424.1 458 50.4
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 1.2e-116 424.1 468 51.1
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.8e-116 421.8 468 48.1
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 2.2e-115 419.9 501 46.1
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 4.9e-115 418.7 469 49.9
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 1.4e-114 417.2 470 49.4
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.4e-114 417.2 408 54.4
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 3.2e-114 416.0 465 49.2
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.2e-113 414.1 457 47.9
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 7.8e-113 411.4 441 52.2
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.0e-112 411.0 468 47.9
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.7e-112 410.2 446 52.0
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 1.9e-111 406.8 468 49.6
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 1.9e-111 406.8 465 49.0
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 2.1e-110 403.3 468 48.7
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 2.8e-110 402.9 468 47.6
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 3.6e-110 402.5 468 47.6
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 3.6e-110 402.5 427 52.2
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 5.3e-109 398.7 453 47.2
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.4e-106 389.8 472 46.2
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.2e-106 389.4 356 55.1
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.1e-106 388.3 383 56.9
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 6.6e-104 381.7 346 54.0
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.9e-103 380.2 382 52.4
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 2.5e-103 379.8 586 41.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 5.6e-103 378.6 468 45.1
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.0e-101 372.5 422 48.3
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 6.9e-101 371.7 496 45.4
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 2.1e-97 360.1 495 45.3
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.8e-96 357.1 444 45.0
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 9.6e-95 351.3 420 48.8
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 2.2e-91 340.1 270 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 2.9e-91 339.7 471 42.0
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.2e-89 334.3 470 41.5
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 7.9e-89 331.6 469 38.2
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.3e-87 325.9 383 46.2
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 4.3e-87 325.9 344 52.0
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 9.0e-85 318.2 350 52.3
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 2.5e-82 310.1 307 52.4
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 7.1e-82 308.5 393 44.5
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 3.9e-80 302.8 248 62.5
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 5.1e-80 302.4 308 52.9
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.5e-79 300.8 307 53.1
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 2.2e-75 287.0 462 41.8
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.9e-74 283.9 441 43.5
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 1.1e-69 268.1 466 37.1
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 2.5e-66 256.9 446 39.0
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 1.5e-55 221.1 180 57.2
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-45 188.3 161 62.1
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 5.5e-42 176.0 479 30.5
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 8.8e-40 168.7 265 42.3
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 4.9e-38 162.9 461 29.7
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 5.4e-37 159.5 126 64.3
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.7e-36 157.1 410 32.4
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.9e-22 109.8 145 49.0
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.3e-22 109.0 174 43.1
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 4.4e-15 86.7 115 44.3
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 3.7e-14 83.6 105 43.8
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 4.6e-12 76.6 91 52.7
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.6e-11 72.8 165 34.5
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 6.2e-09 66.2 46 63.0
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 8.1e-09 65.9 167 33.5
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 8.1e-09 65.9 144 29.2
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.4e-08 65.1 187 26.7
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.4e-08 65.1 152 28.9
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.0e-08 63.5 104 35.6
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 4.0e-08 63.5 169 27.8
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 6.8e-08 62.8 120 30.0
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 6.8e-08 62.8 49 57.1
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 6.8e-08 62.8 188 28.7
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.9e-08 62.4 186 30.6
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-07 62.0 116 31.9
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.5e-07 61.6 104 32.7
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 2.0e-07 61.2 122 32.8
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.0e-07 61.2 165 26.7
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 2.0e-07 61.2 104 34.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 2.0e-07 61.2 170 27.6
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.6e-07 60.8 116 31.0
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.6e-07 60.8 116 31.0
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.6e-07 60.8 116 31.0
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.6e-07 60.8 116 31.0
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 3.4e-07 60.5 108 34.3
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 3.4e-07 60.5 116 31.0
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.4e-07 60.5 188 27.7
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 3.4e-07 60.5 104 34.6
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 4.4e-07 60.1 128 35.2
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 4.4e-07 60.1 146 28.1
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 5.8e-07 59.7 116 30.2
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 5.8e-07 59.7 116 30.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 5.8e-07 59.7 115 29.6
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 7.6e-07 59.3 123 31.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 7.6e-07 59.3 104 33.7
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 7.6e-07 59.3 36 72.2
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 9.9e-07 58.9 117 29.9
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.3e-06 58.5 139 29.5
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.3e-06 58.5 137 32.1
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.3e-06 58.5 122 30.3
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.3e-06 58.5 114 30.7
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.7e-06 58.2 116 30.2
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.2e-06 57.8 160 28.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.2e-06 57.8 105 33.3
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 2.9e-06 57.4 160 28.8
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.9e-06 57.4 160 28.8
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 4.9e-06 56.6 167 28.1
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 6.4e-06 56.2 165 26.1
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 6.4e-06 56.2 146 28.1
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 6.4e-06 56.2 128 31.2
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 8.4e-06 55.8 187 24.1
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 8.4e-06 55.8 116 30.2


User provided reference genes

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