Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42335 Brassica carinata HOM05D000696 ORTHO05D032973 5.6e-33 143.7 71 100.0
C08p54190 Brassica napus HOM05D006213 ORTHO05D032973 3.3e-17 91.3 71 71.8
Thhalv10007056m.g Eutrema salsugineum HOM05D000696 ORTHO05D001068 3.6e-16 87.8 62 69.4
CARHR000130 Cardamine hirsuta HOM05D000696 ORTHO05D001068 1.8e-15 85.5 62 66.1
AT1G02190 Arabidopsis thaliana HOM05D000696 ORTHO05D001068 4.0e-15 84.3 62 67.7
Carub.0001s0007 Capsella rubella HOM05D000696 ORTHO05D001068 5.2e-15 84.0 62 64.5
Carub.0001s1121 Capsella rubella HOM05D000696 ORTHO05D001068 5.8e-14 80.5 62 59.7
AL1G10020 Arabidopsis lyrata HOM05D000696 ORTHO05D001068 8.3e-13 76.6 63 65.1
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 3.2e-12 74.7 49 81.6
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.2e-11 72.8 50 72.0
THA.LOC104813547 Tarenaya hassleriana HOM05D000696 ORTHO05D001068 5.6e-09 63.9 62 45.2
DCAR_025018 Daucus carota HOM05D000696 ORTHO05D001068 3.6e-08 61.2 62 40.3
SalBow4G0192 Salvia bowleyana HOM05D000696 ORTHO05D001068 8.1e-08 60.1 62 38.7
Rhsim07G0040300 Rhododendron simsii HOM05D000696 ORTHO05D001068 1.1e-07 59.7 61 41.0
BolC8t52929H Brassica oleracea HOM05D006213 ORTHO05D032973 1.8e-07 58.9 47 70.2
Ciclev10019279m.g Citrus clementina HOM05D000696 ORTHO05D001068 2.4e-07 58.5 61 39.3
A04p28900 Brassica napus HOM05D000696 ORTHO05D001068 3.1e-07 58.2 62 45.2
ClCG05G002790 Citrullus lanatus HOM05D000696 ORTHO05D001068 3.1e-07 58.2 62 40.3
MELO3C006252.2 Cucumis melo HOM05D000696 ORTHO05D001068 3.1e-07 58.2 62 38.7
BcaC02g07497 Brassica carinata HOM05D000696 ORTHO05D001068 4.0e-07 57.8 62 45.2
C04p66150 Brassica napus HOM05D000696 ORTHO05D001068 4.0e-07 57.8 62 45.2
CsaV3_3G010300 Cucumis sativus L. HOM05D000696 ORTHO05D001068 4.0e-07 57.8 62 35.5
Atru.chr2.2131 Acer truncatum HOM05D000696 ORTHO05D001068 5.2e-07 57.4 63 39.7
BcaC02g07495 Brassica carinata HOM05D000696 ORTHO05D001068 5.2e-07 57.4 62 43.5
C04p66170 Brassica napus HOM05D000696 ORTHO05D001068 5.2e-07 57.4 62 43.5
CSS0040935 Camellia sinensis var. sinensis HOM05D000696 ORTHO05D001068 5.2e-07 57.4 62 40.3
BcaB06g29022 Brassica carinata HOM05D000696 ORTHO05D001068 6.8e-07 57.0 62 45.2
MELO3C006254.2 Cucumis melo HOM05D000696 ORTHO05D001068 6.8e-07 57.0 62 40.3
Atru.chr5.25 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 61 37.7
Atru.chr5.26 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 62 40.3
Atru.chr5.30 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 62 40.3
Atru.chr5.53 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 61 37.7
Atru.chr5.56 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 62 40.3
Atru.chr5.59 Acer truncatum HOM05D000696 ORTHO05D001068 1.2e-06 56.2 62 40.3
CsaV3_3G010290 Cucumis sativus L. HOM05D000696 ORTHO05D001068 1.2e-06 56.2 62 37.1
BcaB02g09258 Brassica carinata HOM05D000696 ORTHO05D001068 1.5e-06 55.8 62 43.5
MD07G1086200 Malus domestica HOM05D000696 ORTHO05D001068 1.5e-06 55.8 61 39.3
Prupe.2G112600 Prunus persica HOM05D000696 ORTHO05D001068 1.5e-06 55.8 61 39.3
BolC4t28119H Brassica oleracea HOM05D000696 ORTHO05D001068 2.0e-06 55.5 62 41.9
BraA04t18366Z Brassica rapa HOM05D000696 ORTHO05D001068 2.0e-06 55.5 62 41.9
ClCG05G002780 Citrullus lanatus HOM05D000696 ORTHO05D001068 2.0e-06 55.5 62 35.5
Ciclev10011291m.g Citrus clementina HOM05D000696 ORTHO05D001068 2.0e-06 55.5 61 37.7
DCAR_015766 Daucus carota HOM05D000696 ORTHO05D001068 2.0e-06 55.5 59 37.3
FvH4_7g08560 Fragaria vesca HOM05D000696 ORTHO05D001068 2.0e-06 55.5 61 39.3
Rhsim07G0040100 Rhododendron simsii HOM05D000696 ORTHO05D001068 2.0e-06 55.5 63 34.9
TAR365G1257 Trochodendron aralioides HOM05D000696 ORTHO05D001068 2.0e-06 55.5 63 36.5
A04p28890 Brassica napus HOM05D000696 ORTHO05D001068 2.6e-06 55.1 62 41.9
BraA04t18364Z Brassica rapa HOM05D000696 ORTHO05D001068 2.6e-06 55.1 62 41.9
CsaV3_3G010310 Cucumis sativus L. HOM05D000696 ORTHO05D001068 2.6e-06 55.1 61 41.0
Duzib128G0647 Durio zibethinus HOM05D000696 ORTHO05D001068 2.6e-06 55.1 62 37.1
Gohir.A06G157900 Gossypium hirsutum HOM05D000696 ORTHO05D001068 3.4e-06 54.7 62 38.7
SalBow5G4933 Salvia bowleyana HOM05D000696 ORTHO05D001068 3.4e-06 54.7 61 37.7
AL4G34630 Arabidopsis lyrata HOM05D000696 ORTHO05D001068 4.4e-06 54.3 62 45.2
CARHR131820 Cardamine hirsuta HOM05D000696 ORTHO05D001068 4.4e-06 54.3 62 41.9
Haze_02920 Corylus avellana HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
FAN03G2433 Fragaria x ananassa HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
FAN10G1397 Fragaria x ananassa HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
FAN10G3870 Fragaria x ananassa HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
Oeu002892.1 Olea europaea HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
Phvul.010G040500 Phaseolus vulgaris HOM05D000696 ORTHO05D001068 4.4e-06 54.3 61 37.7
Rhsim07G0040200 Rhododendron simsii HOM05D000696 ORTHO05D001068 4.4e-06 54.3 63 34.9
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 5.8e-06 53.9 48 60.4
Cc02_g25790 Coffea canephora HOM05D000696 ORTHO05D001068 5.8e-06 53.9 63 36.5
Thhalv10016375m.g Eutrema salsugineum HOM05D000696 ORTHO05D001068 5.8e-06 53.9 62 40.3
TWI59G0544 Tripterygium wilfordii HOM05D000696 ORTHO05D001068 5.8e-06 53.9 62 37.1
BcaC02g11892 Brassica carinata HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 41.9
A05p08270 Brassica napus HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 41.9
C04p10240 Brassica napus HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 41.9
BolC4t22622H Brassica oleracea HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 41.9
Lj3g0010571 Lotus japonicus HOM05D000696 ORTHO05D001068 7.6e-06 53.5 63 36.5
QL11p047781 Quercus lobata HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 37.1
RcHm_v2.0_Chr1g0343261 Rosa chinensis HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 37.1
Sed0011458 Sechium edule HOM05D000696 ORTHO05D001068 7.6e-06 53.5 62 37.1
VMungo0331G1835 Vigna mungo HOM05D000696 ORTHO05D001068 7.6e-06 53.5 61 36.1
Aa31sc70G30 Aethionema arabicum HOM05D000696 ORTHO05D001068 9.9e-06 53.1 51 49.0
AL1G56730 Arabidopsis lyrata HOM05D000696 ORTHO05D001068 9.9e-06 53.1 39 74.4
AT2G37700 Arabidopsis thaliana HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 41.9
BolC4t28118H Brassica oleracea HOM05D000696 ORTHO05D001068 9.9e-06 53.1 63 44.4
Carub.0004s1965 Capsella rubella HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 40.3
Gohir.D06G164016 Gossypium hirsutum HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 35.5
Gohir.D06G164064 Gossypium hirsutum HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 35.5
Gorai.010G191100 Gossypium raimondii HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 35.5
Gorai.010G191300 Gossypium raimondii HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 37.1
Gorai.012G081600 Gossypium raimondii HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 32.3
Manes.01G274900 Manihot esculenta HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 37.1
Thecc.10G001600 Theobroma cacao HOM05D000696 ORTHO05D001068 9.9e-06 53.1 62 35.5


User provided reference genes

Program Settings