Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.6e-174 615.9 299 100.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.6e-174 615.9 299 100.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.4e-170 602.8 322 92.9
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 3.0e-165 585.1 304 95.4
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.4e-164 581.6 304 95.1
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 8.6e-152 540.4 302 87.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.1e-149 533.5 301 86.4
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 1.4e-149 533.1 301 87.0
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.4e-146 523.1 301 85.4
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 4.6e-145 518.1 302 84.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.3e-144 515.8 321 83.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.8e-134 482.3 304 80.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 9.9e-132 473.8 330 77.0
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.6e-124 449.1 232 91.8
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 9.3e-122 440.7 312 68.3
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.9e-119 433.0 313 69.6
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 4.3e-119 431.8 313 66.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 4.8e-118 428.3 313 67.7
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.1e-117 427.2 314 66.6
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.5e-116 423.3 314 66.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.2e-115 419.5 307 66.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.2e-114 415.6 317 64.7
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 9.3e-114 414.1 302 65.9
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.6e-113 413.3 315 64.8
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.7e-113 412.5 306 67.3
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.3e-112 410.2 311 63.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.3e-112 409.5 311 62.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 6.7e-112 407.9 245 76.3
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 8.7e-112 407.5 245 74.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 79.7
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 79.7
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.5e-111 406.8 246 74.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.9e-111 406.4 313 63.3
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.9e-111 406.4 316 63.6
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.3e-111 405.6 250 74.4
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 4.3e-111 405.2 258 72.1
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 4.3e-111 405.2 245 74.3
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 7.4e-111 404.4 248 73.8
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 3.7e-110 402.1 314 64.0
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 6.2e-110 401.4 248 73.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 8.1e-110 401.0 258 72.1
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.4e-109 400.2 311 62.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.4e-109 400.2 312 63.8
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.4e-109 400.2 245 73.9
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.2e-108 397.1 314 63.7
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 5.8e-108 394.8 245 73.1
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 7.6e-108 394.4 254 71.3
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.2e-107 392.9 309 62.1
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.2e-107 392.9 311 63.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 2.9e-107 392.5 311 64.3
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.4e-107 391.3 320 61.2
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.9e-106 389.8 248 71.8
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 2.4e-106 389.4 317 59.9
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.2e-106 389.0 298 64.1
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 2.7e-105 386.0 272 67.3
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.5e-105 385.6 245 71.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.6e-105 385.2 302 62.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 7.9e-105 384.4 242 72.7
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.0e-104 384.0 317 59.6
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-104 383.6 245 72.2
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.7e-104 381.3 248 71.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.5e-103 380.2 287 66.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.9e-103 379.8 315 61.3
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 3.3e-103 379.0 263 67.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 4.3e-103 378.6 240 70.8
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 7.4e-103 377.9 315 58.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 7.4e-103 377.9 307 61.6
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 7.4e-103 377.9 262 66.4
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.6e-102 376.7 310 60.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.9e-101 371.3 256 68.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.0e-101 370.9 254 67.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.0e-101 370.9 254 67.7
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.3e-99 367.1 296 60.5
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.8e-99 365.5 242 69.4
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 3.8e-99 365.5 308 59.4
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 6.5e-99 364.8 260 67.3
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 7.1e-98 361.3 248 68.5
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.6e-97 358.6 248 67.7
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.9e-97 357.8 229 72.9
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 3.0e-96 355.9 234 70.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 6.7e-96 354.8 245 69.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 6.7e-96 354.8 316 58.5
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.9e-95 353.2 239 67.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 6.9e-93 344.7 244 65.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.2e-92 344.0 300 56.0
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.6e-92 342.8 290 57.6
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 3.4e-92 342.4 252 63.5
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 5.9e-92 341.7 208 74.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.3e-91 340.5 302 58.3
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 9.4e-90 334.3 207 74.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 5.9e-84 315.1 245 62.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.9e-82 310.1 310 53.2
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 3.2e-82 309.3 246 61.8
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.0e-75 287.7 202 68.3
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.0e-75 287.7 232 59.1
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.4e-74 283.9 231 58.9
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.8e-72 276.9 180 78.9
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 6.7e-72 275.0 248 57.3
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 7.4e-71 271.6 176 67.6
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 5.3e-69 265.4 149 81.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 9.1e-69 264.6 252 55.2
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.6e-65 252.7 166 66.9
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.0e-63 246.9 177 66.7
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.8e-56 223.8 173 61.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 4.8e-54 215.7 286 42.0
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.5e-47 194.1 244 45.1
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 4.5e-44 182.6 190 51.6
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 5.6e-42 175.6 197 47.7
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.9e-38 163.3 169 53.3
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 6.2e-33 145.6 105 62.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.9e-30 136.7 99 64.6
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.2e-28 131.3 122 51.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.7e-27 127.5 94 66.0
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.7e-27 127.5 98 61.2
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-25 121.3 118 52.5
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.1e-25 120.6 118 53.4
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.5e-23 114.4 150 40.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.3e-22 111.3 178 37.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 6.4e-22 109.0 63 79.4
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 4.6e-20 102.8 158 40.5
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-19 100.9 147 40.1
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.1e-17 94.0 58 72.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 8.4e-14 82.0 210 31.4
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-10 71.6 95 43.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 3.3e-10 70.1 116 37.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.8e-09 67.0 115 36.5
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 118 33.9
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 56 50.0
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 4.0e-08 63.2 61 49.2
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 3.4e-07 60.1 56 53.6
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 3.4e-07 60.1 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.4e-07 59.7 40 67.5
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 4.9e-06 56.2 50 58.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.4e-06 55.8 49 59.2
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 6.4e-06 55.8 50 60.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 8.4e-06 55.5 50 58.0


User provided reference genes

Program Settings