Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.1e-184 649.8 315 100.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 6.3e-161 570.9 321 89.7
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 4.1e-144 515.0 321 83.2
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 4.1e-144 515.0 321 83.2
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.6e-138 495.7 325 80.0
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 5.7e-138 494.6 325 80.0
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 1.2e-124 450.3 323 73.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.5e-122 443.4 323 72.1
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 2.6e-122 442.6 322 73.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 9.8e-122 440.7 342 71.3
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 3.1e-120 435.6 324 71.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.2e-119 433.7 323 71.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 6.6e-110 401.4 322 66.8
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.3e-102 377.1 230 80.9
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.1e-101 374.0 322 58.7
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.2e-99 365.2 323 60.7
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 4.4e-98 362.1 323 59.4
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.4e-96 356.3 321 58.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.1e-96 355.5 322 56.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 4.1e-96 355.5 323 58.5
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.5e-95 352.4 321 56.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.7e-94 350.1 248 67.7
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 2.3e-94 349.7 328 57.0
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.3e-94 349.7 248 66.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.6e-94 347.8 311 57.6
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.1e-93 347.4 248 65.7
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 3.3e-93 345.9 323 55.4
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 4.3e-93 345.5 320 55.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 4.3e-93 345.5 251 65.7
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 7.3e-93 344.7 254 63.4
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 7.3e-93 344.7 321 56.7
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 7.3e-93 344.7 249 66.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.2e-92 344.0 323 55.7
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.6e-92 343.6 252 63.5
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.1e-92 343.2 249 65.1
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.7e-92 342.0 320 54.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.4e-91 340.5 252 63.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.8e-91 340.1 322 55.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.8e-91 340.1 249 64.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.1e-91 339.3 318 55.7
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.4e-90 335.9 247 64.4
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 5.8e-90 335.1 259 62.5
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.3e-89 334.0 229 69.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.3e-89 334.0 229 69.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.3e-89 334.0 246 64.2
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.7e-89 332.4 258 61.6
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 8.3e-89 331.3 248 63.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.1e-88 330.9 250 65.2
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.4e-88 330.5 249 63.5
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.6e-87 327.0 246 62.2
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.6e-87 327.0 248 62.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.1e-87 326.6 250 63.2
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.7e-87 326.2 248 63.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.5e-87 325.9 246 62.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 6.0e-87 325.1 247 63.6
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 3.9e-86 322.4 249 61.8
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.6e-86 321.2 293 56.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.9e-85 320.1 296 55.1
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.5e-85 319.7 248 60.9
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.3e-85 319.3 245 62.9
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.3e-85 319.3 323 53.3
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.6e-84 315.8 324 53.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.2e-84 315.1 253 60.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.2e-84 315.1 253 60.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 8.1e-84 314.7 248 61.3
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.1e-83 314.3 250 60.0
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 5.2e-83 312.0 250 58.4
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 5.2e-83 312.0 245 64.1
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 6.8e-83 311.6 259 58.3
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.5e-82 310.5 246 61.0
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 3.4e-82 309.3 249 61.4
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 3.4e-82 309.3 248 60.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.4e-82 309.3 255 59.2
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.1e-80 304.3 310 52.3
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.2e-80 302.8 320 50.3
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 4.1e-80 302.4 243 59.3
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 5.4e-80 302.0 243 61.3
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 3.5e-79 299.3 298 55.4
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.6e-79 298.9 252 57.1
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 4.6e-79 298.9 250 59.6
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.7e-78 297.0 304 51.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.0e-78 296.2 312 53.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 6.6e-78 295.0 250 58.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 1.5e-77 293.9 233 61.8
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.5e-77 293.9 229 63.3
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 6.2e-76 288.5 267 53.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.1e-75 287.7 316 48.1
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.4e-75 286.6 204 67.2
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.0e-74 283.5 204 66.7
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.4e-72 277.3 284 52.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.2e-71 274.2 248 56.0
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.6e-71 273.9 210 62.4
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.5e-69 266.5 288 50.3
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.2e-64 249.6 241 51.5
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 7.4e-61 238.4 236 53.8
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.9e-56 223.8 177 63.8
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 3.2e-56 223.0 238 49.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.0e-54 216.5 222 52.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 3.0e-54 216.5 191 57.6
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 8.7e-54 214.9 186 54.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.7e-49 200.7 151 64.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.8e-49 199.5 166 56.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 4.2e-48 196.1 150 72.0
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.9e-45 187.2 168 56.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 7.6e-42 175.3 269 38.3
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 2.1e-39 167.2 245 40.0
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 4.5e-34 149.4 200 42.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 5.1e-30 136.0 157 48.4
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.2e-28 130.6 121 51.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.4e-27 127.1 93 65.6
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.9e-22 109.8 151 43.0
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 2.8e-20 103.6 145 42.8
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.0e-18 97.4 113 49.6
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 2.0e-18 97.4 113 49.6
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 3.5e-18 96.7 165 35.8
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.7e-17 94.4 78 55.1
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.2e-17 94.0 58 72.4
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.2e-17 94.0 135 37.8
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.5e-13 79.0 99 45.5
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.0e-11 72.4 98 42.9
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 4.5e-10 69.7 116 37.1
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 5.0e-09 66.2 63 47.6
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 4.2e-08 63.2 135 34.8
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 2.7e-07 60.5 33 81.8
GSVIVG01032376001 Vitis vinifera HOM05D001287 ORTHO05D001226 3.6e-07 60.1 216 24.5
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.7e-07 59.7 40 67.5
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 8.0e-07 58.9 197 28.9
Actinidia05974 Actinidia chinensis HOM05D001287 ORTHO05D001226 8.8e-06 55.5 189 24.3
Potri.017G071200 Populus trichocarpa HOM05D001287 ORTHO05D001226 8.8e-06 55.5 226 23.9


User provided reference genes

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