Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.1e-87 326.6 162 100.0
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 2.6e-86 322.0 163 99.4
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 2.6e-86 322.0 163 99.4
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 7.3e-81 303.9 163 95.1
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.1e-79 300.1 163 93.9
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 4.0e-79 298.1 163 92.6
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 3.5e-75 285.0 163 89.0
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 1.1e-73 280.0 163 86.5
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 5.6e-73 277.7 163 85.9
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.8e-71 272.7 163 83.4
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 2.6e-70 268.9 163 84.7
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 7.6e-70 267.3 159 83.6
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.2e-69 265.8 163 82.8
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 8.7e-66 253.8 161 78.3
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 2.7e-59 232.3 162 72.8
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 1.9e-57 226.1 155 71.0
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 1.1e-55 220.3 159 66.7
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.4e-55 219.9 159 67.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 1.4e-55 219.9 161 67.7
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 1.4e-55 219.9 160 69.4
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 2.4e-55 219.2 156 67.9
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 3.4e-54 215.3 158 65.8
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 5.9e-54 214.5 158 67.1
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 7.6e-54 214.2 158 65.2
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.0e-53 213.8 163 69.3
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.0e-53 213.8 162 69.8
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.3e-53 213.4 159 66.0
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 1.7e-53 213.0 161 65.8
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 2.9e-53 212.2 152 68.4
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 6.5e-53 211.1 157 67.5
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 8.4e-53 210.7 157 67.5
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.1e-52 210.3 162 68.5
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.9e-52 209.5 162 66.0
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.9e-52 209.5 159 65.4
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.9e-52 209.5 154 65.6
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 2.5e-52 209.1 156 67.9
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 3.2e-52 208.8 154 69.5
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.2e-52 208.8 159 64.8
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 5.5e-52 208.0 155 65.2
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 5.5e-52 208.0 154 68.2
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 5.5e-52 208.0 162 66.0
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 5.5e-52 208.0 153 67.3
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.6e-51 206.5 154 66.2
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.6e-51 206.5 161 66.5
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.1e-51 206.1 162 65.4
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.1e-51 206.1 160 68.1
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.1e-51 206.1 160 68.1
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 2.1e-51 206.1 147 70.1
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 2.1e-51 206.1 154 66.2
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 2.7e-51 205.7 158 65.2
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 2.7e-51 205.7 165 61.8
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 2.7e-51 205.7 156 67.3
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.7e-51 205.7 154 66.2
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 3.5e-51 205.3 160 66.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 4.6e-51 204.9 161 67.1
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 7.9e-51 204.1 156 65.4
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 7.9e-51 204.1 161 65.8
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.3e-50 203.4 159 61.6
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 1.3e-50 203.4 155 64.5
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.3e-50 202.6 156 64.1
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 2.3e-50 202.6 154 65.6
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 3.9e-50 201.8 163 65.6
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 3.9e-50 201.8 155 63.9
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 5.1e-50 201.4 172 59.9
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.1e-49 200.3 160 63.1
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.9e-49 199.5 154 66.9
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.9e-49 199.5 155 63.2
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 4.3e-49 198.4 161 64.6
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 4.3e-49 198.4 155 62.6
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 5.7e-49 198.0 154 64.9
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 9.7e-49 197.2 157 61.8
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 9.7e-49 197.2 154 64.3
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 9.7e-49 197.2 152 63.8
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.6e-48 196.4 155 65.8
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 2.2e-48 196.1 157 61.8
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 2.8e-48 195.7 156 59.6
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.8e-48 195.7 157 61.1
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 2.8e-48 195.7 154 61.7
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 8.2e-48 194.1 159 61.0
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.4e-47 193.4 112 89.3
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 2.4e-47 192.6 157 61.8
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 9.0e-47 190.7 157 61.8
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.2e-46 190.3 142 66.9
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 2.0e-46 189.5 111 87.4
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.6e-46 189.1 161 61.5
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 3.4e-46 188.7 160 59.4
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 3.8e-45 185.3 160 58.8
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 1.1e-44 183.7 158 58.9
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 2.5e-44 182.6 140 62.1
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 2.5e-44 182.6 181 54.7
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.2e-44 181.8 161 60.9
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 6.1e-43 177.9 154 57.1
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 7.9e-43 177.6 138 63.8
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 3.9e-42 175.3 150 60.7
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 7.4e-41 171.0 155 57.4
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 1.3e-40 170.2 156 56.4
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.2e-40 167.5 138 60.1
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 8.2e-40 167.5 155 54.8
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.2e-38 163.7 155 56.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 2.3e-34 149.4 153 56.9
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 2.3e-34 149.4 168 51.2
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 4.4e-33 145.2 96 71.9
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.6e-30 136.7 103 65.0
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 2.9e-29 132.5 94 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 2.5e-28 129.4 151 49.7
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.1e-23 114.0 74 68.9
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 4.5e-22 108.6 78 66.7
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 3.8e-21 105.5 81 64.2
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 3.8e-21 105.5 81 64.2
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 4.0e-18 95.5 80 57.5
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 1.2e-17 94.0 82 59.8
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 1.2e-17 94.0 81 59.3
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.0e-14 83.2 104 46.2
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 2.2e-13 79.7 63 61.9
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 9.5e-12 74.3 70 52.9
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.0e-09 66.6 49 59.2
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 5.7e-09 65.1 81 49.4


User provided reference genes

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