Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 5.0e-210 734.2 368 100.0
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.8e-186 654.8 376 89.9
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.3e-175 619.0 400 81.2
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 3.4e-174 615.1 395 81.0
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 6.4e-173 610.9 376 83.8
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 8.3e-173 610.5 376 84.0
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 7.5e-166 587.4 374 78.9
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 8.6e-162 573.9 376 79.0
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.7e-157 559.7 376 76.6
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 1.1e-156 557.0 376 76.9
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 5.1e-154 548.1 376 75.5
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 6.2e-152 541.2 376 72.9
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.4e-151 540.0 376 73.9
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 2.7e-131 472.6 372 65.3
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 4.6e-123 445.3 378 60.8
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.6e-120 436.8 377 60.5
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.2e-120 436.4 375 60.3
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.1e-119 434.1 375 59.5
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 2.4e-119 433.0 376 59.8
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 9.0e-119 431.0 377 59.7
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 1.2e-118 430.6 376 59.6
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 4.5e-118 428.7 378 59.8
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 4.5e-118 428.7 367 60.8
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 1.0e-117 427.6 375 59.5
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 2.2e-117 426.4 374 59.9
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 5.0e-117 425.2 377 57.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 8.5e-117 424.5 378 58.7
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.9e-116 423.3 375 60.0
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 3.2e-116 422.5 377 58.9
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 4.2e-116 422.2 383 58.5
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.2e-115 420.6 376 57.7
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.6e-115 420.2 374 58.8
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 4.6e-115 418.7 375 58.7
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.6e-115 418.7 382 58.6
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 6.1e-115 418.3 376 58.0
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.0e-114 417.5 378 58.2
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.8e-114 416.8 376 58.0
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 3.9e-114 415.6 376 57.2
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 5.1e-114 415.2 374 57.2
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 6.7e-114 414.8 384 56.5
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.1e-113 414.1 369 57.2
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.5e-113 413.7 375 58.9
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.5e-113 413.7 375 58.1
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 5.7e-113 411.8 384 55.5
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 2.2e-112 409.8 374 57.5
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 4.8e-112 408.7 374 57.0
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.4e-111 406.4 390 56.4
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 3.1e-111 406.0 374 57.0
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 4.1e-111 405.6 378 56.6
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 5.3e-111 405.2 378 55.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 6.9e-111 404.8 373 57.4
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 6.9e-111 404.8 384 55.2
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 9.1e-111 404.4 373 57.4
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 4.5e-110 402.1 375 57.6
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 5.0e-109 398.7 376 56.9
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.1e-108 397.5 383 57.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 1.4e-108 397.1 375 56.5
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.9e-108 396.7 375 57.3
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 4.2e-108 395.6 375 56.5
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 4.2e-108 395.6 374 56.1
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.2e-107 394.0 374 55.6
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 2.7e-107 392.9 380 56.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 7.9e-107 391.3 353 60.1
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 2.3e-106 389.8 378 54.8
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 5.1e-106 388.7 374 55.1
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 8.8e-106 387.9 424 52.4
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 3.3e-105 386.0 372 56.5
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.8e-104 382.9 372 55.4
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 2.8e-104 382.9 347 58.8
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 3.2e-100 369.4 385 51.2
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 7.2e-100 368.2 353 54.1
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.3e-98 363.2 376 52.4
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 3.9e-98 362.5 375 52.8
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 4.4e-97 359.0 375 52.5
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 2.8e-96 356.3 398 51.3
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 6.3e-96 355.1 361 55.1
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 8.2e-96 354.8 400 48.8
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.8e-93 345.9 376 48.1
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.5e-92 343.2 385 49.4
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 2.3e-90 336.7 339 51.0
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 8.8e-90 334.7 364 51.9
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.3e-88 330.9 356 52.5
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 4.5e-86 322.4 341 50.4
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 5.0e-85 318.9 376 48.7
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.2e-81 307.8 375 47.2
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.6e-81 306.6 252 62.7
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 5.7e-81 305.4 371 47.4
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 6.6e-77 292.0 258 59.3
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.0e-74 283.1 242 62.4
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 5.7e-73 278.9 370 43.5
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 5.7e-73 278.9 242 61.2
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.4e-71 273.5 246 59.3
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 3.1e-71 273.1 251 59.4
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 2.7e-70 270.0 252 56.3
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 7.8e-70 268.5 375 42.7
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.7e-69 267.3 235 60.9
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 1.1e-68 264.6 351 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 7.3e-68 261.9 310 47.1
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 4.7e-67 259.2 368 44.3
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.2e-64 250.4 366 41.8
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 6.4e-64 248.8 306 48.0
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.8e-58 230.7 243 51.9
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.4e-48 195.7 319 40.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 7.1e-47 192.2 372 36.0
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.6e-46 191.0 310 39.0
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 6.2e-43 179.1 241 41.1
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 3.6e-35 153.3 139 54.0
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.6e-33 147.1 127 55.1
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.7e-32 144.4 129 52.7
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.9e-31 141.0 90 78.9
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 4.2e-31 139.8 374 32.1
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.6e-30 137.9 382 30.1
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.3e-29 134.0 126 50.0
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 2.1e-27 127.5 374 29.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 1.6e-22 111.3 72 75.0
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 1.9e-20 104.4 131 46.6
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.6e-19 101.3 98 54.1
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.3e-18 96.3 105 47.6
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.5e-17 94.7 106 49.1
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.1e-14 84.3 87 48.3
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.3e-13 81.6 192 36.5
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.8e-10 71.2 56 55.4
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 9.0e-10 68.9 60 56.7


User provided reference genes

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