Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42169 Brassica carinata HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 100.0
BcaC07g42188 Brassica carinata HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 100.0
A09p67890 Brassica napus HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 81.7
C08p52230 Brassica napus HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 100.0
BolC8t52757H Brassica oleracea HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 100.0
BraA09t42122Z Brassica rapa HOM05D000124 ORTHO05D000056 1.6e-24 115.5 71 100.0
BcaC07g42189 Brassica carinata HOM05D000124 ORTHO05D000056 1.2e-22 109.4 71 95.8
Thhalv10009418m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 1.3e-21 105.9 71 74.6
Sp1g03180 Schrenkiella parvula HOM05D000124 ORTHO05D000056 1.3e-21 105.9 71 87.3
A10p02810 Brassica napus HOM05D000124 ORTHO05D000056 1.7e-21 105.5 71 74.6
BraA10t42548Z Brassica rapa HOM05D000124 ORTHO05D000056 1.7e-21 105.5 71 74.6
CARHR003700 Cardamine hirsuta HOM05D000124 ORTHO05D000056 3.7e-21 104.4 71 76.1
BcaNung05656 Brassica carinata HOM05D000124 ORTHO05D000056 8.3e-21 103.2 71 74.6
C05p02560 Brassica napus HOM05D000124 ORTHO05D000056 8.3e-21 103.2 71 74.6
BolC5t29037H Brassica oleracea HOM05D000124 ORTHO05D000056 8.3e-21 103.2 71 74.6
AT1G04370 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 4.1e-20 100.9 71 76.1
BcaC05g24445 Brassica carinata HOM05D000124 ORTHO05D000056 5.4e-20 100.5 72 72.2
Carub.0001s0354 Capsella rubella HOM05D000124 ORTHO05D000056 1.6e-19 99.0 71 73.2
AL1G13970 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 1.0e-18 96.3 71 83.1
BcaB07g31009 Brassica carinata HOM05D000124 ORTHO05D000056 8.1e-16 86.7 72 80.6
A09p20460 Brassica napus HOM05D000124 ORTHO05D000056 6.8e-15 83.6 72 79.2
BraA09t37651Z Brassica rapa HOM05D000124 ORTHO05D000056 6.8e-15 83.6 72 79.2
BcaC04g21916 Brassica carinata HOM05D000124 ORTHO05D000056 1.2e-14 82.8 72 76.4
C09p25840 Brassica napus HOM05D000124 ORTHO05D000056 1.2e-14 82.8 72 76.4
BolC9t55492H Brassica oleracea HOM05D000124 ORTHO05D000056 1.2e-14 82.8 72 76.4
Thhalv10003355m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 2.2e-13 78.6 74 74.3
Sp2g08290 Schrenkiella parvula HOM05D000124 ORTHO05D000056 2.2e-13 78.6 73 78.1
AT5G43410 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 7.1e-12 73.6 66 81.8
CARHR180200 Cardamine hirsuta HOM05D000124 ORTHO05D000056 2.1e-11 72.0 65 80.0
THA.LOC104815990 Tarenaya hassleriana HOM05D000124 ORTHO05D000056 4.6e-11 70.9 83 62.7
Carub.0008s0519 Capsella rubella HOM05D000124 ORTHO05D000056 6.0e-11 70.5 66 78.8
Aa31LG5G3700 Aethionema arabicum HOM05D000124 ORTHO05D000056 1.0e-10 69.7 67 79.1
AL8G16930 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 9.5e-09 63.2 67 73.1
AL3G37870 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 1.6e-08 62.4 70 65.7
AT3G23220 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 2.1e-08 62.0 80 60.0
Ah.04g156030 Amaranthus hybridus HOM05D000124 ORTHO05D000056 3.6e-08 61.2 69 47.8
C07p14310 Brassica napus HOM05D000124 ORTHO05D000056 3.6e-08 61.2 70 47.1
Carub.0003s2345 Capsella rubella HOM05D000124 ORTHO05D000056 3.6e-08 61.2 73 53.4
THA.LOC104809088 Tarenaya hassleriana HOM05D000124 ORTHO05D000056 4.7e-08 60.8 67 59.7
CARHR099170 Cardamine hirsuta HOM05D000124 ORTHO05D000056 8.1e-08 60.1 71 64.8
BolC7t41924H Brassica oleracea HOM05D000124 ORTHO05D000056 1.1e-07 59.7 70 45.7
Aa31LG8G9720 Aethionema arabicum HOM05D000124 ORTHO05D000056 1.8e-07 58.9 63 50.8
BcaB06g26457 Brassica carinata HOM05D000124 ORTHO05D000056 1.8e-07 58.9 70 48.6
Sp3g20870 Schrenkiella parvula HOM05D000124 ORTHO05D000056 3.1e-07 58.2 71 47.9
Atru.chr4.2086 Acer truncatum HOM05D000124 ORTHO05D000056 4.0e-07 57.8 73 42.5
A01p31820 Brassica napus HOM05D000124 ORTHO05D000056 4.0e-07 57.8 70 45.7
BraA01t03306Z Brassica rapa HOM05D000124 ORTHO05D000056 4.0e-07 57.8 70 45.7
Oeu019981.1 Olea europaea HOM05D000124 ORTHO05D000056 4.0e-07 57.8 62 50.0
Sc13g0005240 Simmondsia chinensis HOM05D000124 ORTHO05D000056 4.0e-07 57.8 61 63.9
TWI09G1186 Tripterygium wilfordii HOM05D000124 ORTHO05D000056 4.0e-07 57.8 64 50.0
BraA07t28725Z Brassica rapa HOM05D000124 ORTHO05D000056 5.2e-07 57.4 70 47.1
Thhalv10022200m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 6.8e-07 57.0 68 50.0
Gohir.A09G226600 Gossypium hirsutum HOM05D000124 ORTHO05D000056 6.8e-07 57.0 64 50.0
Psat0s2310g0080 Pisum sativum HOM05D000124 ORTHO05D000056 6.8e-07 57.0 65 67.7
Gohir.D09G227500 Gossypium hirsutum HOM05D000124 ORTHO05D000056 8.9e-07 56.6 68 58.8
Oeu025838.1 Olea europaea HOM05D000124 ORTHO05D000056 8.9e-07 56.6 56 50.0
BcaB04g20463 Brassica carinata HOM05D000124 ORTHO05D000056 1.2e-06 56.2 70 45.7
PGSC0003DMG400017233 Solanum tuberosum HOM05D000124 ORTHO05D000056 1.2e-06 56.2 68 52.9
Peaxi162Scf00024g00271 Petunia axillaris HOM05D000124 ORTHO05D000056 1.5e-06 55.8 60 53.3
CsaV3_3G012190 Cucumis sativus L. HOM05D000124 ORTHO05D000056 2.0e-06 55.5 62 48.4
Gorai.006G250100 Gossypium raimondii HOM05D000124 ORTHO05D000056 2.0e-06 55.5 68 54.4
Medtr1g074230 Medicago truncatula HOM05D000124 ORTHO05D000056 2.0e-06 55.5 71 60.6
Gohir.D09G227300 Gossypium hirsutum HOM05D000124 ORTHO05D000056 2.6e-06 55.1 66 60.6
Gorai.006G249900 Gossypium raimondii HOM05D000124 ORTHO05D000056 2.6e-06 55.1 66 60.6
TPR.G26432 Trifolium pratense HOM05D000124 ORTHO05D000056 2.6e-06 55.1 67 52.2
Glyma.10G007100 Glycine max HOM05D000124 ORTHO05D000056 3.4e-06 54.7 67 49.3
AUR62028234 Chenopodium quinoa HOM05D000124 ORTHO05D000056 4.4e-06 54.3 66 63.6
Sed0006324 Sechium edule HOM05D000124 ORTHO05D000056 5.8e-06 53.9 63 46.0
Sopen09g032850 Solanum pennellii HOM05D000124 ORTHO05D000056 5.8e-06 53.9 65 61.5
TPR.G18566 Trifolium pratense HOM05D000124 ORTHO05D000056 5.8e-06 53.9 65 69.2
CAN.G793.36 Capsicum annuum HOM05D000124 ORTHO05D000056 7.6e-06 53.5 67 65.7
Gohir.A09G226400 Gossypium hirsutum HOM05D000124 ORTHO05D000056 7.6e-06 53.5 68 45.6
PGR031G2946 Punica granatum HOM05D000124 ORTHO05D000056 7.6e-06 53.5 63 47.6
TPR.G26446 Trifolium pratense HOM05D000124 ORTHO05D000056 7.6e-06 53.5 71 57.7
A07p09260 Brassica napus HOM05D000124 ORTHO05D000056 9.9e-06 53.1 70 45.7
AUR62002113 Chenopodium quinoa HOM05D000124 ORTHO05D000056 9.9e-06 53.1 66 62.1
Gohir.D09G227200 Gossypium hirsutum HOM05D000124 ORTHO05D000056 9.9e-06 53.1 68 45.6
Gorai.006G249800 Gossypium raimondii HOM05D000124 ORTHO05D000056 9.9e-06 53.1 68 45.6
Oeu021431.1 Olea europaea HOM05D000124 ORTHO05D000056 9.9e-06 53.1 62 48.4
Sed0023221 Sechium edule HOM05D000124 ORTHO05D000056 9.9e-06 53.1 59 67.8


User provided reference genes

Program Settings