Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-48 195.7 95 100.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-48 195.7 95 100.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.7e-40 167.9 101 83.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.2e-40 166.8 101 82.2
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.2e-40 166.8 101 84.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-38 162.5 101 80.2
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.0e-38 162.2 101 80.2
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.6e-38 161.8 101 79.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.9e-38 160.6 101 80.2
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-37 159.5 101 79.2
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-37 159.5 101 79.2
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-37 158.7 101 81.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.7e-35 151.8 101 78.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-12 75.9 87 54.0
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 5.5e-12 74.3 86 51.2
Aa31LG1G20540 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.6e-11 72.8 94 50.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.1e-11 72.4 89 52.8
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.6e-11 71.6 81 48.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.7e-11 71.2 78 53.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.1e-11 70.9 91 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-10 70.1 82 51.2
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.0e-10 70.1 75 53.3
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.8e-10 69.3 100 40.0
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.8e-10 69.3 87 50.6
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.0e-10 68.6 91 47.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.0e-10 68.6 91 48.4
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.2e-10 67.8 84 45.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.2e-10 67.8 92 53.3
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.8e-10 67.4 87 44.8
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.8e-10 67.4 106 46.2
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.8e-10 67.4 92 43.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 6.8e-10 67.4 96 47.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 8.8e-10 67.0 86 48.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-09 66.6 103 46.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.2e-09 66.6 83 53.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.0e-09 65.9 89 50.6
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.6e-09 65.5 83 50.6
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.6e-09 65.5 102 46.1
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.4e-09 64.7 81 50.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.4e-09 64.7 90 44.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-09 64.3 86 48.8
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.7e-09 64.3 105 44.8
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.7e-09 64.3 84 44.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.7e-09 64.3 102 45.1
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.5e-09 63.9 79 46.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 7.5e-09 63.9 82 52.4
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.3e-08 63.2 79 49.4
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.3e-08 63.2 78 51.3
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.7e-08 62.8 93 46.2
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.7e-08 62.8 88 43.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.7e-08 62.8 89 46.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.7e-08 62.8 91 49.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.7e-08 62.8 92 47.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.7e-08 62.8 98 42.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-08 62.8 89 41.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-08 62.4 93 46.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.2e-08 62.4 88 47.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.2e-08 62.4 88 47.7
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.2e-08 62.4 81 51.9
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.8e-08 62.0 100 42.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.8e-08 62.0 89 43.8
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 3.7e-08 61.6 94 45.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.7e-08 61.6 83 48.2
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 3.7e-08 61.6 88 47.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.7e-08 61.6 95 47.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.7e-08 61.6 92 41.3
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.7e-08 61.6 95 45.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.7e-08 61.6 70 51.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.7e-08 61.6 86 44.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.9e-08 61.2 88 46.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 4.9e-08 61.2 84 48.8
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.9e-08 61.2 103 46.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.9e-08 61.2 80 50.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 6.3e-08 60.8 95 44.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 6.3e-08 60.8 99 42.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 6.3e-08 60.8 80 48.8
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 8.3e-08 60.5 85 47.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 8.3e-08 60.5 85 47.1
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 8.3e-08 60.5 94 41.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 8.3e-08 60.5 87 48.3
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 8.3e-08 60.5 89 42.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.1e-07 60.1 117 37.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-07 60.1 97 44.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-07 60.1 86 46.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-07 60.1 89 46.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-07 59.7 85 45.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-07 59.7 85 45.9
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.4e-07 59.7 85 45.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-07 59.7 86 44.2
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.4e-07 59.7 101 44.6
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-07 59.7 89 47.2
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.4e-07 59.7 89 41.6
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-07 59.7 86 44.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.4e-07 59.7 97 41.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.4e-07 59.7 97 41.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.4e-07 59.7 85 48.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.4e-07 59.7 78 46.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.8e-07 59.3 90 45.6
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-07 59.3 85 43.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.8e-07 59.3 85 45.9
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.8e-07 59.3 85 45.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.8e-07 59.3 96 45.8
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.8e-07 59.3 84 48.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-07 59.3 86 46.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.8e-07 59.3 84 48.8
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.8e-07 59.3 93 46.2
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.4e-07 58.9 95 46.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 2.4e-07 58.9 100 41.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.4e-07 58.9 86 47.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.4e-07 58.9 96 40.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 3.1e-07 58.5 89 38.2
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.1e-07 58.5 90 45.6
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 3.1e-07 58.5 88 40.9
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.1e-07 58.5 103 39.8
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.1e-07 58.2 86 45.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.1e-07 58.2 88 43.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.4e-07 57.8 88 47.7
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.4e-07 57.8 94 38.3
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.0e-07 57.4 83 45.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.0e-07 57.4 94 41.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 9.2e-07 57.0 88 45.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 9.2e-07 57.0 86 48.8
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.2e-07 57.0 77 49.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-06 56.6 91 45.1
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.2e-06 56.6 87 41.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.2e-06 56.6 87 46.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.2e-06 56.6 83 43.4
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.2e-06 56.6 88 46.6
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.2e-06 56.6 89 43.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.6e-06 56.2 94 44.7
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.6e-06 56.2 84 46.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.6e-06 56.2 101 39.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.0e-06 55.8 91 44.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.7e-06 55.5 98 43.9
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.7e-06 55.5 75 49.3
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.7e-06 55.5 103 38.8
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.5e-06 55.1 88 44.3
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 3.5e-06 55.1 92 43.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.5e-06 55.1 94 39.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.5e-06 54.7 82 43.9
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.5e-06 54.7 82 45.1
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.5e-06 54.7 95 42.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 4.5e-06 54.7 95 42.1
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.5e-06 54.7 88 42.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 5.9e-06 54.3 91 44.0
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 5.9e-06 54.3 88 42.0
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.9e-06 54.3 77 48.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.8e-06 53.9 89 41.6


User provided reference genes

Program Settings