Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-78 296.6 150 100.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.0e-77 292.4 150 97.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.6e-76 287.3 150 96.0
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.5e-75 285.4 157 93.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.7e-74 281.2 160 90.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.0e-74 280.4 150 92.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.2e-73 277.7 150 92.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-72 276.6 161 89.4
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.9e-71 271.9 150 90.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.0e-68 261.2 149 84.6
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-66 256.5 150 84.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.6e-66 255.0 150 84.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.1e-66 253.8 150 82.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-65 253.4 150 82.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-65 253.4 150 84.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.2e-65 251.1 150 82.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.9e-65 250.4 150 81.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.9e-65 250.4 150 81.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-64 250.0 150 81.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.4e-64 248.1 150 80.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.4e-64 248.1 150 80.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 7.5e-64 247.3 147 82.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-63 246.1 147 79.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.7e-63 246.1 147 81.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 5.4e-62 241.1 162 75.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.0e-60 236.9 147 74.8
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.0e-60 236.9 147 74.8
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.0e-60 236.9 147 74.8
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.9e-60 235.0 150 72.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.6e-60 234.2 150 73.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 4.3e-59 231.5 150 74.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 6.2e-58 227.6 147 71.4
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 71.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 72.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 70.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 70.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 70.7
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 70.0
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 70.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 9.9e-56 220.3 148 70.9
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 70.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 70.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 68.7
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 68.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 70.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 69.3
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 68.0
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.2e-55 219.2 148 70.9
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 69.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 69.3
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-54 216.5 151 80.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 69.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.2e-54 215.3 151 77.5
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 66.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 68.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 68.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 67.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 66.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 66.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 66.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.0e-53 211.1 149 66.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 68.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 66.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 5.1e-52 208.0 135 73.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 65.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 146 65.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 63.3
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 67.3
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 63.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 64.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 63.1
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 62.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 62.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 3.6e-50 201.8 181 55.8
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 62.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 64.0
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 63.9
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.1e-50 200.7 148 66.2
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 62.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.1e-49 200.3 149 61.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.4e-49 199.9 151 62.3
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.8e-49 199.5 149 61.7
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 61.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 9.0e-49 197.2 147 62.6
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 61.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-48 196.8 152 63.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 61.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 147 60.5
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.4e-48 195.3 149 61.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.4e-48 195.3 142 62.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.4e-48 194.9 150 62.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.4e-48 194.9 149 59.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 4.4e-48 194.9 149 60.4
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.8e-48 194.5 143 62.9
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.3e-47 193.4 143 62.2
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-47 193.4 143 62.2
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-47 193.4 143 62.2
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-47 193.4 143 62.2
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 61.1
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-47 193.0 149 59.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.7e-47 193.0 146 61.6
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.7e-47 193.0 146 61.0
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.7e-47 193.0 147 61.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-47 192.6 145 61.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-47 192.6 145 61.4
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.2e-47 192.6 150 60.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 2.2e-47 192.6 139 63.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.9e-47 192.2 144 62.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 63.3
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 58.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-46 190.3 147 59.9
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-46 189.9 144 61.8
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-46 189.1 170 56.5
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 2.4e-46 189.1 222 46.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.2e-46 188.3 147 61.9
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.2e-46 188.3 144 62.5
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.1e-46 187.6 144 60.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 9.3e-46 187.2 149 56.4
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.3e-46 187.2 161 56.5
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.7e-45 185.7 147 61.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 6.0e-45 184.5 144 60.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 7.8e-45 184.1 139 62.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.0e-44 183.7 147 61.9
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.0e-44 182.2 150 56.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 150 56.7
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 3.3e-43 178.7 143 58.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.3e-43 178.3 143 59.4
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.3e-43 177.6 143 57.3
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 7.3e-43 177.6 151 56.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.3e-43 177.6 143 57.3
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 2.8e-42 175.6 193 48.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.6e-42 175.3 140 58.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 6.2e-42 174.5 107 78.5
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.0e-41 170.6 143 57.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 8.7e-36 154.1 142 56.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.6e-35 151.4 149 48.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.1e-33 147.1 130 56.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.1e-33 147.1 130 56.9
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.4e-32 142.1 149 47.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.3e-31 140.2 106 57.5
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.2e-31 139.4 105 59.0
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.2e-31 139.4 105 59.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.9e-31 139.0 133 52.6
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-30 137.1 99 64.6
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.7e-29 132.5 145 46.9
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.9e-29 131.0 89 66.3
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.0e-28 130.6 89 69.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.3e-28 130.2 89 67.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.1e-28 128.3 89 69.7
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.3e-27 125.6 138 50.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 7.4e-27 124.4 91 65.9
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 3.7e-26 122.1 144 43.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.6e-24 115.9 82 61.0
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.5e-22 109.4 86 54.7
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.2e-22 108.6 149 38.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.7e-21 105.9 139 36.7
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.5e-19 100.1 52 90.4
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 5.7e-19 98.2 130 35.4
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 9.0e-17 90.9 144 36.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 5.9e-16 88.2 130 27.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.9e-15 85.9 39 97.4
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.5e-15 84.3 72 54.2
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.2e-14 81.3 101 40.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.6e-13 80.1 141 26.2
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 7.9e-13 77.8 52 76.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.0e-12 77.4 85 45.9
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 1.8e-12 76.6 52 75.0
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 2.3e-12 76.3 52 75.0
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.7e-12 74.7 104 32.7
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.3e-11 72.0 82 50.0
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 8.2e-10 67.8 130 26.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.2e-08 63.9 127 25.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.6e-08 62.8 81 40.7
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.5e-08 62.0 46 63.0
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.0e-07 60.8 135 25.2


User provided reference genes

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