Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 0.0e+00 2358.6 1201 100.0
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 0.0e+00 1914.4 1216 83.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 0.0e+00 1910.2 1215 83.2
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 0.0e+00 1909.4 1215 83.4
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 0.0e+00 1905.6 1216 83.0
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 6.8e-232 808.5 609 71.8
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 8.1e-217 758.4 593 68.6
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.6e-212 744.2 609 66.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 7.6e-207 725.3 615 66.7
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 9.6e-202 708.4 606 64.4
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 7.1e-181 639.0 538 66.0
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.4e-176 624.0 620 58.2
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 8.3e-129 466.1 691 42.0
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 4.7e-124 450.3 1812 25.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 9.2e-120 436.0 1567 27.0
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 4.9e-105 387.1 1739 25.4
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.5e-93 348.2 667 35.2
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.3e-93 347.8 674 35.9
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.3e-93 347.8 665 35.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.6e-92 344.4 664 36.3
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.7e-92 344.0 670 35.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.1e-91 342.8 660 36.5
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.4e-91 342.4 633 35.9
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.4e-91 342.4 655 35.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 6.8e-91 340.1 643 35.1
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.2e-90 339.3 654 35.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 3.8e-89 334.3 633 35.7
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.9e-88 332.0 627 35.7
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 6.0e-87 327.0 726 32.9
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 6.0e-87 327.0 683 34.3
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.1e-85 322.8 629 36.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.6e-84 318.9 625 36.2
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 4.8e-84 317.4 716 33.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.8e-83 315.5 640 33.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 3.1e-83 314.7 660 34.8
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.2e-82 312.8 634 35.6
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.6e-82 311.6 648 35.2
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.3e-81 309.3 678 33.0
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.4e-80 303.9 656 33.8
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.6e-79 302.4 744 32.4
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.1e-79 302.0 625 33.8
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.1e-79 302.0 661 33.1
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.7e-79 301.6 631 34.9
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.0e-79 300.4 621 33.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.7e-78 298.9 608 35.7
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 5.1e-78 297.4 632 34.5
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.7e-78 296.6 641 34.5
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.5e-77 295.0 745 32.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 4.3e-77 294.3 656 33.7
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.2e-76 290.4 630 33.3
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 8.1e-76 290.0 747 31.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.4e-75 289.3 736 31.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.3e-75 287.3 552 36.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.9e-75 287.0 633 34.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 9.0e-75 286.6 968 28.3
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 9.0e-75 286.6 736 31.1
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 7.6e-74 283.5 684 30.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 8.4e-73 280.0 618 33.8
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.2e-72 277.7 762 28.3
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-70 272.7 718 31.6
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.5e-69 268.5 824 27.8
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.3e-69 267.7 763 28.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 7.4e-69 266.9 528 33.5
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.8e-68 264.2 298 46.6
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 6.2e-68 263.8 312 46.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 6.2e-68 263.8 618 31.6
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 6.9e-67 260.4 629 32.3
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.3e-65 256.1 763 28.7
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.7e-65 255.8 307 44.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.7e-65 255.8 741 30.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.9e-65 255.0 166 76.5
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 3.8e-65 254.6 174 75.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.4e-65 253.4 711 31.1
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.1e-64 253.1 300 45.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-64 252.3 166 75.3
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.5e-64 250.8 308 42.9
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.5e-64 250.8 309 43.7
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-63 249.6 309 44.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.1e-63 248.8 626 30.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.5e-63 248.1 166 75.3
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.0e-62 246.5 658 30.5
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-62 245.7 877 28.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 5.1e-62 244.2 919 27.2
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.1e-62 244.2 732 30.1
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.1e-62 244.2 584 31.5
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.5e-61 242.7 312 42.9
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 7.4e-61 240.4 585 30.6
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.1e-60 238.8 174 71.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.8e-60 238.4 593 30.7
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.2e-60 237.3 327 41.9
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-59 236.5 162 74.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.8e-59 235.7 191 65.4
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 9.0e-59 233.4 303 41.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.0e-58 232.3 316 43.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 5.8e-58 230.7 759 27.0
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.8e-58 230.7 322 41.9
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.0e-57 229.9 307 44.6
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 6.5e-57 227.3 654 29.4
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.6e-55 222.6 324 39.5
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.1e-55 222.2 669 28.1
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.3e-54 218.8 915 26.4
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.3e-54 218.8 346 36.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 8.7e-54 216.9 302 40.1
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.1e-53 216.5 323 38.4
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.3e-53 214.5 257 45.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 5.7e-53 214.2 311 38.6
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.7e-53 213.4 702 28.8
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.4e-51 208.8 331 38.1
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.1e-51 208.4 381 36.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.0e-50 205.7 634 29.7
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 5.9e-50 204.1 305 40.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.2e-48 198.0 264 40.9
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.2e-48 197.2 299 38.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.4e-48 196.8 308 39.0
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.2e-47 196.4 314 36.9
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 7.9e-47 193.7 262 38.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-46 191.8 308 38.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.7e-46 190.7 280 38.6
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-45 189.9 291 39.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.5e-45 189.5 509 30.1
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 2.4e-43 182.2 186 58.6
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.1e-43 181.8 275 38.2
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-40 173.3 572 28.5
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.0e-38 166.8 205 41.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-37 162.9 519 30.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 3.3e-37 161.8 248 40.7
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-36 159.5 221 42.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-32 146.0 235 40.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.2e-32 144.8 860 23.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.2e-31 143.3 387 31.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 8.0e-31 140.6 502 28.1
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.4e-27 129.8 202 38.6
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.7e-26 125.6 175 37.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.2e-25 122.5 279 29.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.4e-24 117.1 172 40.1
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.4e-24 117.1 172 40.1
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.6e-23 116.3 179 38.5
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.2e-20 105.9 161 37.9
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-19 103.6 172 41.9
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.1e-19 103.6 183 38.3
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.1e-19 101.7 95 45.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.5e-16 92.4 114 37.7
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 3.2e-16 92.0 441 25.4
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 3.0e-14 85.5 337 26.4
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.4e-13 82.0 170 33.5
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 1.1e-11 77.0 135 34.1
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.1e-11 75.5 103 38.8
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 3.1e-11 75.5 179 33.5
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.6e-09 67.4 117 33.3
Sp1g04780 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.1e-08 67.0 103 43.7
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.6e-07 63.2 304 27.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.3e-06 59.3 95 38.9


User provided reference genes

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