Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 1.4e-37 159.1 79 100.0
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 5.8e-31 137.1 79 88.6
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 7.1e-29 130.2 79 83.5
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 1.2e-28 129.4 80 88.8
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 3.5e-28 127.9 79 87.3
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 4.3e-26 120.9 79 84.8
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 2.1e-25 118.6 81 79.0
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 2.4e-24 115.2 79 82.3
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.5e-23 112.5 81 77.8
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 2.6e-23 111.7 79 81.0
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 5.8e-23 110.5 78 74.4
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 7.6e-23 110.2 79 77.2
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 2.9e-22 108.2 52 100.0
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 2.9e-22 108.2 52 100.0
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 2.9e-22 108.2 52 100.0
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.3e-19 99.4 82 63.4
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 4.9e-14 80.9 78 60.3
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 8.4e-14 80.1 79 53.2
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.4e-13 78.6 79 54.4
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.4e-13 78.6 79 54.4
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 2.4e-13 78.6 79 54.4
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 3.2e-13 78.2 79 54.4
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 4.2e-13 77.8 79 54.4
C08p02320 Brassica napus HOM05D007881 ORTHO05D009922 5.4e-13 77.4 58 77.6
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 5.4e-13 77.4 76 53.9
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 7.1e-13 77.0 72 56.9
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 3.5e-12 74.7 75 54.7
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 2.3e-11 72.0 49 69.4
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 5.1e-11 70.9 50 66.0
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 8.7e-11 70.1 67 52.2
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.5e-10 69.3 72 55.6
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 1.5e-10 69.3 57 56.1
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 1.9e-10 68.9 72 51.4
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 3.3e-10 68.2 62 56.5
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 4.3e-10 67.8 43 69.8
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 4.3e-10 67.8 72 55.6
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 5.6e-10 67.4 44 75.0
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 7.4e-10 67.0 62 53.2
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 7.4e-10 67.0 72 54.2
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 7.4e-10 67.0 64 57.8
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 9.6e-10 66.6 63 52.4
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 9.6e-10 66.6 37 81.1
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 1.6e-09 65.9 73 49.3
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 1.6e-09 65.9 67 52.2
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 1.6e-09 65.9 71 47.9
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 2.1e-09 65.5 44 65.9
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 2.1e-09 65.5 72 48.6
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 3.7e-09 64.7 43 72.1
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 6.2e-09 63.9 53 54.7
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 8.1e-09 63.5 43 65.1
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 8.1e-09 63.5 60 50.0
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.1e-08 63.2 67 50.7
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 1.1e-08 63.2 42 66.7
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.1e-08 63.2 63 49.2
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 1.8e-08 62.4 73 43.8
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 1.8e-08 62.4 67 49.3
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 1.8e-08 62.4 66 54.5
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 2.4e-08 62.0 36 75.0
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 2.4e-08 62.0 38 68.4
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 2.4e-08 62.0 50 58.0
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 2.4e-08 62.0 49 57.1
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 2.4e-08 62.0 44 65.9
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 3.1e-08 61.6 39 69.2
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 4.0e-08 61.2 42 64.3
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 5.3e-08 60.8 61 47.5
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 5.3e-08 60.8 41 68.3
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 5.3e-08 60.8 42 64.3
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 5.3e-08 60.8 42 64.3
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 6.9e-08 60.5 41 61.0
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 6.9e-08 60.5 41 61.0
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 6.9e-08 60.5 73 46.6
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 9.0e-08 60.1 41 61.0
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 9.0e-08 60.1 44 59.1
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 1.2e-07 59.7 68 44.1
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 1.2e-07 59.7 44 56.8
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 1.5e-07 59.3 58 48.3
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 2.0e-07 58.9 59 50.8
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 2.0e-07 58.9 40 60.0
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 2.6e-07 58.5 56 48.2
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 7.6e-07 57.0 39 64.1
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 7.6e-07 57.0 39 71.8
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 7.6e-07 57.0 40 55.0
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 9.9e-07 56.6 52 53.8
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 9.9e-07 56.6 59 49.2
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 1.3e-06 56.2 67 40.3


User provided reference genes

Program Settings