Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 7.1e-46 186.8 88 100.0
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 7.1e-46 186.8 88 100.0
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 7.1e-46 186.8 88 100.0
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 7.1e-46 186.8 88 100.0
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 7.3e-43 176.8 84 98.8
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 7.3e-43 176.8 84 98.8
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 8.7e-36 153.3 88 84.1
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 3.4e-32 141.4 89 75.3
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 9.9e-32 139.8 91 73.6
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 2.5e-30 135.2 91 70.3
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 3.2e-30 134.8 91 70.3
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 6.0e-29 130.6 92 67.4
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.5e-27 125.9 91 68.1
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 5.1e-20 100.9 91 53.8
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.1e-19 99.8 66 63.6
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.1e-19 99.8 66 65.2
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.9e-19 99.0 66 63.6
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.9e-19 99.0 66 63.6
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 2.5e-19 98.6 74 60.8
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 3.3e-19 98.2 66 62.1
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 5.7e-19 97.4 66 62.1
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 9.7e-19 96.7 70 60.0
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 9.7e-19 96.7 70 60.0
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 1.3e-18 96.3 67 56.7
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 1.6e-18 95.9 70 60.0
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 2.8e-18 95.1 66 63.6
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 4.8e-18 94.4 66 60.6
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 6.3e-18 94.0 83 54.2
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 6.3e-18 94.0 66 62.1
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 6.3e-18 94.0 66 62.1
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 8.2e-18 93.6 64 59.4
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 8.2e-18 93.6 66 62.1
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 1.1e-17 93.2 90 48.9
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 1.1e-17 93.2 87 49.4
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 1.4e-17 92.8 66 60.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.4e-17 92.8 72 54.2
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 1.8e-17 92.4 66 60.6
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 1.8e-17 92.4 87 48.3
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 1.8e-17 92.4 80 56.2
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 1.8e-17 92.4 73 53.4
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 2.4e-17 92.0 66 60.6
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 2.4e-17 92.0 87 46.0
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 3.1e-17 91.7 72 52.8
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.1e-17 91.7 72 52.8
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.1e-17 91.7 72 52.8
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 4.1e-17 91.3 63 63.5
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 5.3e-17 90.9 80 52.5
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 6.9e-17 90.5 66 56.1
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 6.9e-17 90.5 78 53.8
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 6.9e-17 90.5 78 53.8
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 9.0e-17 90.1 71 53.5
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 9.0e-17 90.1 65 61.5
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 9.0e-17 90.1 71 56.3
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.2e-16 89.7 66 59.1
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 1.2e-16 89.7 74 52.7
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.2e-16 89.7 65 60.0
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 1.2e-16 89.7 67 53.7
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 1.5e-16 89.4 73 52.1
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.5e-16 89.4 78 55.1
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 1.5e-16 89.4 74 56.8
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 2.0e-16 89.0 67 55.2
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 2.0e-16 89.0 67 55.2
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 2.0e-16 89.0 75 52.0
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 2.0e-16 89.0 66 57.6
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 2.6e-16 88.6 64 59.4
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 2.6e-16 88.6 66 54.5
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 3.4e-16 88.2 73 53.4
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 3.4e-16 88.2 67 55.2
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 3.4e-16 88.2 80 53.8
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 4.5e-16 87.8 75 53.3
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 4.5e-16 87.8 73 52.1
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 4.5e-16 87.8 67 55.2
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 4.5e-16 87.8 83 50.6
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 4.5e-16 87.8 73 54.8
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 5.9e-16 87.4 65 61.5
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 5.9e-16 87.4 77 55.8
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 7.7e-16 87.0 62 58.1
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 7.7e-16 87.0 69 58.0
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.0e-15 86.7 66 57.6
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 1.0e-15 86.7 66 57.6
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.0e-15 86.7 66 57.6
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 1.0e-15 86.7 68 57.4
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.0e-15 86.7 62 58.1
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.0e-15 86.7 62 59.7
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 1.0e-15 86.7 62 59.7
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 1.0e-15 86.7 62 59.7
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 1.0e-15 86.7 62 59.7
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 1.3e-15 86.3 59 62.7
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 1.3e-15 86.3 92 45.7
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 1.7e-15 85.9 61 60.7
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 1.7e-15 85.9 61 60.7
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 2.2e-15 85.5 62 59.7
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.2e-15 85.5 66 57.6
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 2.9e-15 85.1 63 57.1
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.9e-15 85.1 89 44.9
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 2.9e-15 85.1 73 52.1
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 3.8e-15 84.7 70 51.4
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 3.8e-15 84.7 61 59.0
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 5.0e-15 84.3 67 52.2
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 5.0e-15 84.3 63 57.1
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 5.0e-15 84.3 67 55.2
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 6.5e-15 84.0 70 52.9
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 6.5e-15 84.0 68 50.0
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 6.5e-15 84.0 73 52.1
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 6.5e-15 84.0 82 46.3
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 8.5e-15 83.6 71 47.9
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 8.5e-15 83.6 64 57.8
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 1.1e-14 83.2 74 52.7
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 1.9e-14 82.4 73 53.4
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 2.5e-14 82.0 62 54.8
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 3.2e-14 81.6 61 54.1
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 5.5e-14 80.9 67 50.7
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 5.5e-14 80.9 58 56.9
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 9.4e-14 80.1 69 52.2
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 1.2e-13 79.7 63 52.4
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 1.2e-13 79.7 65 50.8
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 3.6e-13 78.2 76 46.1
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 4.6e-13 77.8 63 52.4
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 6.1e-13 77.4 65 49.2
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 6.1e-13 77.4 63 54.0
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.0e-12 76.6 62 53.2
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 1.8e-12 75.9 65 49.2
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 3.0e-12 75.1 62 50.0
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 5.1e-12 74.3 57 57.9
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 6.7e-12 73.9 64 54.7
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 7.4e-11 70.5 74 43.2
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 2.4e-09 65.5 67 46.3
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 9.1e-09 63.5 50 50.0
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 1.2e-08 63.2 51 49.0
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 3.4e-08 61.6 48 54.2
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 6.5e-07 57.4 55 43.6


User provided reference genes

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