Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 2.0e-74 282.3 141 100.0
BraA09t42006Z Brassica rapa HOM05D010829 ORTHO05D001770 1.0e-62 243.4 144 87.5
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 1.9e-61 239.2 144 86.8
C08p50890 Brassica napus HOM05D010829 ORTHO05D001770 1.6e-60 236.1 140 87.1
BolC8t52617H Brassica oleracea HOM05D010829 ORTHO05D001770 1.6e-60 236.1 140 87.1
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 4.8e-36 154.8 169 57.4
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 1.5e-34 149.8 159 56.6
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 1.5e-34 149.8 159 56.6
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 1.5e-34 149.8 159 56.6
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 5.9e-34 147.9 159 56.6
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 5.9e-34 147.9 159 56.6
BcaB02g06768 Brassica carinata HOM05D010829 ORTHO05D001770 7.6e-34 147.5 160 56.9
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 8.7e-30 134.0 169 55.0
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 1.5e-29 133.3 166 54.2
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 2.2e-28 129.4 166 53.0
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 8.5e-25 117.5 147 57.1
CARHR006610 Cardamine hirsuta HOM05D010829 ORTHO05D001770 3.6e-23 112.1 163 46.6
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 1.1e-21 107.1 171 48.0
Carub.0001s0623 Capsella rubella HOM05D010829 ORTHO05D001770 1.2e-18 97.1 178 40.4
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 5.3e-11 71.6 85 50.6
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 2.0e-10 69.7 80 56.2
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.0e-10 69.7 116 44.0
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 1.0e-09 67.4 97 43.3
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.3e-09 67.0 90 48.9
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 1.3e-09 67.0 120 45.8
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.0e-09 65.1 85 45.9
Medtr5g075040 Medicago truncatula HOM05D002277 ORTHO05D001770 8.5e-09 64.3 87 47.1
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 8.5e-09 64.3 107 44.9
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.1e-08 63.9 94 44.7
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-08 63.5 86 48.8
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.5e-08 62.8 128 36.7
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.5e-08 62.8 106 44.3
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.5e-08 62.8 87 50.6
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 3.2e-08 62.4 85 48.2
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.2e-08 62.4 75 52.0
Psat2g051880 Pisum sativum HOM05D002277 ORTHO05D001770 3.2e-08 62.4 86 45.3
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.2e-08 62.0 94 46.8
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 4.2e-08 62.0 86 48.8
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 4.2e-08 62.0 84 48.8
Ciclev10002474m.g Citrus clementina HOM05D002277 ORTHO05D001770 5.5e-08 61.6 64 51.6
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.2e-08 61.2 81 48.1
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 7.2e-08 61.2 92 45.7
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.4e-08 60.8 86 46.5
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.2e-07 60.5 173 34.1
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.2e-07 60.5 85 47.1
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 1.2e-07 60.5 87 48.3
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.6e-07 60.1 113 46.9
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.6e-07 60.1 42 64.3
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 1.6e-07 60.1 84 48.8
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 1.6e-07 60.1 80 48.8
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.1e-07 59.7 75 49.3
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.1e-07 59.7 80 50.0
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 2.1e-07 59.7 111 40.5
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.7e-07 59.3 89 43.8
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.7e-07 59.3 79 54.4
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 2.7e-07 59.3 47 63.8
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 3.6e-07 58.9 92 42.4
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.6e-07 58.9 86 45.3
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.6e-07 58.9 79 54.4
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 3.6e-07 58.9 84 45.2
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.7e-07 58.5 98 44.9
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.7e-07 58.5 78 48.7
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.7e-07 58.5 65 50.8
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.7e-07 58.5 78 48.7
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 6.1e-07 58.2 86 45.3
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 6.1e-07 58.2 62 53.2
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 6.1e-07 58.2 77 48.1
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 6.1e-07 58.2 75 49.3
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.1e-07 58.2 62 53.2
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 6.1e-07 58.2 79 46.8
CANSAT54G0878 Cannabis sativa HOM05D002277 ORTHO05D001770 8.0e-07 57.8 42 66.7
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 8.0e-07 57.8 107 43.9
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 8.0e-07 57.8 104 41.3
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.0e-07 57.8 58 55.2
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 8.0e-07 57.8 58 55.2
Lsat_1_v5_gn_5_175260 Lactuca sativa HOM05D002277 ORTHO05D001770 8.0e-07 57.8 114 41.2
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 8.0e-07 57.8 81 49.4
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.0e-06 57.4 64 51.6
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.0e-06 57.4 88 52.3
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.0e-06 57.4 65 49.2
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.0e-06 57.4 122 40.2
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.0e-06 57.4 63 50.8
SGA_v2.0_scaffold60G20916 Striga asiatica HOM05D002277 ORTHO05D001770 1.0e-06 57.4 90 43.3
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.0e-06 57.4 81 49.4
Atru.chr1.2541 Acer truncatum HOM05D002277 ORTHO05D001770 1.4e-06 57.0 67 49.3
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.4e-06 57.0 121 38.8
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.4e-06 57.0 86 45.3
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 1.4e-06 57.0 177 32.8
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 1.4e-06 57.0 84 42.9
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 1.8e-06 56.6 52 57.7
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 1.8e-06 56.6 86 47.7
LjContig00141g0024890 Lotus japonicus HOM05D002277 ORTHO05D001770 1.8e-06 56.6 100 38.0
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.8e-06 56.6 98 43.9
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 1.8e-06 56.6 107 38.3
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 1.8e-06 56.6 158 32.3
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.8e-06 56.6 62 51.6
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.3e-06 56.2 40 62.5
Eucgr.B04020 Eucalyptus grandis HOM05D002277 ORTHO05D001770 2.3e-06 56.2 44 63.6
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.3e-06 56.2 107 41.1
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.0e-06 55.8 83 50.6
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 3.0e-06 55.8 84 46.4
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 3.0e-06 55.8 38 73.7
PGSC0003DMG400029071 Solanum tuberosum HOM05D002277 ORTHO05D001770 3.0e-06 55.8 82 43.9
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 4.0e-06 55.5 85 44.7
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 4.0e-06 55.5 85 44.7
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 4.0e-06 55.5 85 44.7
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 4.0e-06 55.5 43 60.5
Lj2P1099T14 Lonicera japonica HOM05D002277 ORTHO05D001770 4.0e-06 55.5 39 69.2
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.0e-06 55.5 82 46.3
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 5.2e-06 55.1 115 38.3
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 5.2e-06 55.1 39 69.2
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.2e-06 55.1 82 45.1
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 5.2e-06 55.1 80 47.5
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 5.2e-06 55.1 85 45.9
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 5.2e-06 55.1 68 44.1
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.7e-06 54.7 81 42.0
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 6.7e-06 54.7 106 42.5
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 6.7e-06 54.7 79 45.6
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 6.7e-06 54.7 79 45.6
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 6.7e-06 54.7 52 55.8
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.7e-06 54.7 85 44.7
Lalb_Chr17g0345561 Lupinus albus HOM05D002277 ORTHO05D001770 8.8e-06 54.3 111 40.5


User provided reference genes

Program Settings