Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 7.1e-153 543.9 275 100.0
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 4.6e-152 541.2 275 99.3
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 1.6e-128 463.0 275 88.4
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 3.8e-122 441.8 275 85.5
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 5.2e-119 431.4 275 82.9
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 8.6e-106 387.5 283 76.3
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 8.6e-106 387.5 283 76.3
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 8.0e-104 380.9 294 71.1
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 3.0e-103 379.0 287 71.1
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.2e-96 357.1 283 71.0
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.2e-96 357.1 283 71.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.9e-81 306.6 277 65.3
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 7.3e-81 304.7 284 62.3
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 2.1e-80 303.1 291 62.2
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 3.4e-78 295.8 285 61.4
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.2e-77 293.1 281 59.8
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 2.9e-61 239.6 303 50.5
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 7.3e-57 224.9 164 73.2
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.1e-49 201.1 280 47.5
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.5e-49 200.7 273 47.3
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.6e-48 197.2 284 45.4
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 2.1e-48 196.8 112 91.1
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.5e-46 190.7 197 56.3
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.5e-46 190.7 197 55.8
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 2.0e-46 190.3 278 43.9
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 3.4e-46 189.5 277 44.8
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.4e-46 189.5 229 51.1
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 5.8e-46 188.7 200 54.5
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 5.8e-46 188.7 201 53.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 5.8e-46 188.7 197 55.8
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 5.8e-46 188.7 277 43.7
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.0e-45 188.0 257 45.1
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.3e-45 187.6 274 46.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.2e-45 186.8 275 46.5
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 2.9e-45 186.4 257 47.1
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.8e-45 186.0 283 43.5
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 4.9e-45 185.7 220 51.8
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.9e-45 185.7 275 46.5
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 4.9e-45 185.7 276 43.1
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 6.5e-45 185.3 232 51.7
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 2.5e-44 183.3 279 45.2
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 4.2e-44 182.6 248 43.5
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 5.5e-44 182.2 263 45.6
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-43 181.0 275 45.8
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.6e-43 180.6 250 45.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.7e-43 179.9 275 45.8
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 3.5e-43 179.5 290 43.4
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.5e-43 179.5 252 43.7
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 3.5e-43 179.5 209 51.7
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 4.6e-43 179.1 277 43.3
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.0e-42 177.9 243 46.9
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.8e-42 177.2 289 41.9
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.8e-42 177.2 269 43.9
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.8e-42 177.2 197 51.3
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 2.3e-42 176.8 249 46.2
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 2.3e-42 176.8 204 52.0
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 3.0e-42 176.4 195 50.3
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 3.9e-42 176.0 286 41.6
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 6.7e-42 175.3 243 46.9
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 8.7e-42 174.9 262 44.3
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.9e-41 173.7 192 52.1
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 4.3e-41 172.6 290 42.4
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 5.7e-41 172.2 275 41.8
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 5.7e-41 172.2 279 42.7
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 5.7e-41 172.2 224 49.6
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 5.7e-41 172.2 260 43.8
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 9.6e-41 171.4 190 53.7
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.3e-40 171.0 276 45.3
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.6e-40 170.6 277 39.7
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.1e-40 170.2 274 43.8
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 2.1e-40 170.2 262 43.5
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 4.8e-40 169.1 288 40.3
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 8.2e-40 168.3 280 42.9
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.4e-39 167.5 238 45.0
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.4e-39 167.5 295 42.0
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 3.1e-39 166.4 341 39.0
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 9.0e-39 164.9 208 48.1
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 9.0e-39 164.9 272 42.3
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 2.0e-38 163.7 218 47.2
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 2.0e-38 163.7 285 42.1
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.6e-38 163.3 261 42.1
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 7.6e-38 161.8 251 43.8
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.3e-37 161.0 275 42.2
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.7e-37 160.6 229 46.3
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 5.0e-37 159.1 218 45.9
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 6.5e-37 158.7 167 53.3
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 6.5e-37 158.7 293 42.3
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 6.5e-37 158.7 209 47.8
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.4e-36 157.5 197 52.8
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.4e-36 157.5 216 48.6
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.5e-36 156.8 245 44.9
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.5e-36 156.8 245 44.9
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 4.2e-36 156.0 160 55.0
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 7.2e-36 155.2 210 48.1
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 9.3e-36 154.8 188 48.9
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 4.6e-35 152.5 211 46.9
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.9e-35 151.8 197 50.3
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.3e-34 150.2 184 48.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 5.1e-34 149.1 263 40.7
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 4.3e-33 146.0 213 44.1
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 9.7e-33 144.8 272 40.1
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-32 144.4 88 80.7
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.6e-32 144.1 186 48.4
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 4.8e-32 142.5 272 39.3
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 1.5e-30 137.5 196 45.9
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-29 134.0 233 41.2
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 3.8e-29 132.9 216 42.6
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 6.5e-29 132.1 354 32.8
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 6.5e-29 132.1 235 39.6
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.1e-28 131.3 153 51.0
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 1.4e-28 131.0 192 44.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 5.5e-28 129.0 177 48.6
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 1.6e-27 127.5 106 63.2
BcaC07g42450 Brassica carinata HOM05D005913 ORTHO05D007138 9.7e-25 118.2 163 48.5
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 1.8e-23 114.0 70 80.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 9.1e-23 111.7 71 78.9
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 1.5e-22 110.9 195 41.5
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 2.0e-22 110.5 234 35.5
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.1e-17 94.7 84 61.9
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.3e-16 89.0 128 41.4
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 2.4e-15 87.0 54 75.9
Sp7g33090 Schrenkiella parvula HOM05D005913 ORTHO05D007138 4.5e-14 82.8 150 43.3
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.5e-14 82.8 62 67.7
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.3e-13 81.3 48 85.4
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 8.5e-13 78.6 102 52.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.5e-12 77.8 81 48.1
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 2.5e-12 77.0 111 39.6
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 6.7e-10 68.9 70 51.4
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 2.7e-06 57.0 185 31.4


User provided reference genes

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