Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 3.3e-57 224.9 124 100.0
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 8.2e-56 220.3 125 99.2
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 2.4e-55 218.8 125 98.4
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 2.2e-53 212.2 125 94.4
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 5.0e-53 211.1 125 93.6
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 1.3e-50 203.0 124 89.5
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 1.3e-48 196.4 124 86.3
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 6.9e-47 190.7 126 87.3
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 6.9e-47 190.7 126 87.3
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 6.9e-47 190.7 126 87.3
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.2e-46 189.9 125 85.6
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.2e-46 189.9 125 85.6
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.5e-46 189.5 124 83.9
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 5.7e-41 171.0 124 77.4
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 1.7e-37 159.5 124 74.2
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.1e-36 156.8 129 69.8
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 4.4e-33 144.8 129 64.3
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 4.8e-32 141.4 128 64.1
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 5.2e-26 121.3 104 63.5
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 6.7e-26 120.9 127 54.3
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.1e-25 120.2 125 56.8
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 1.5e-25 119.8 70 88.6
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 2.0e-25 119.4 124 52.4
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 2.0e-25 119.4 124 52.4
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 4.4e-25 118.2 126 54.8
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 4.4e-25 118.2 131 55.0
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 7.5e-25 117.5 125 56.8
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 9.7e-25 117.1 127 53.5
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 9.7e-25 117.1 132 53.0
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 1.3e-24 116.7 120 54.2
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 2.2e-24 115.9 127 53.5
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 3.7e-24 115.2 132 52.3
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 6.3e-24 114.4 130 52.3
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 8.2e-24 114.0 128 57.0
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 1.1e-23 113.6 128 52.3
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.1e-23 113.6 128 52.3
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 1.4e-23 113.2 130 50.0
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 1.8e-23 112.8 131 52.7
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 2.4e-23 112.5 113 57.5
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 2.4e-23 112.5 125 51.2
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 2.4e-23 112.5 127 51.2
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 3.1e-23 112.1 150 46.7
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.1e-23 111.7 128 50.8
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 4.1e-23 111.7 127 54.3
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 9.1e-23 110.5 134 53.7
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 9.1e-23 110.5 134 53.7
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 2.0e-22 109.4 131 50.4
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 5.9e-22 107.8 125 48.0
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.0e-21 107.1 113 53.1
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 1.0e-21 107.1 127 52.0
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.2e-21 105.9 113 54.9
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 2.2e-21 105.9 130 51.5
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 2.9e-21 105.5 127 48.8
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 5.0e-21 104.8 127 48.8
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 5.0e-21 104.8 106 52.8
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 6.5e-21 104.4 130 48.5
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 6.5e-21 104.4 130 48.5
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 8.5e-21 104.0 133 51.9
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 1.1e-20 103.6 121 50.4
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.1e-20 103.6 156 44.9
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.5e-20 102.4 103 52.4
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 3.2e-20 102.1 104 54.8
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 3.2e-20 102.1 126 52.4
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 3.2e-20 102.1 104 53.8
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 3.2e-20 102.1 100 56.0
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 4.2e-20 101.7 130 49.2
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 7.2e-20 100.9 126 48.4
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 7.2e-20 100.9 108 52.8
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 9.4e-20 100.5 127 54.3
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.6e-19 99.8 127 49.6
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 1.6e-19 99.8 108 50.0
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 1.6e-19 99.8 106 50.0
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 1.6e-19 99.8 125 48.8
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.1e-19 99.4 125 47.2
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 2.7e-19 99.0 99 56.6
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 4.7e-19 98.2 97 54.6
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 8.0e-19 97.4 123 47.2
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 1.0e-18 97.1 109 51.4
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.4e-18 96.7 97 54.6
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 1.4e-18 96.7 106 52.8
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 1.8e-18 96.3 130 44.6
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.8e-18 96.3 125 49.6
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.8e-18 96.3 125 44.8
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 4.0e-18 95.1 104 51.9
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 4.0e-18 95.1 127 44.9
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 5.2e-18 94.7 124 49.2
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 6.8e-18 94.4 88 60.2
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 6.8e-18 94.4 84 61.9
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 6.8e-18 94.4 128 44.5
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 8.8e-18 94.0 126 46.0
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 1.2e-17 93.6 126 46.0
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 1.5e-17 93.2 76 56.6
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 2.0e-17 92.8 126 47.6
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 2.6e-17 92.4 136 48.5
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 5.7e-17 91.3 130 53.1
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.3e-16 90.1 76 61.8
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.3e-16 90.1 76 61.8
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 2.4e-15 85.9 130 49.2
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 3.1e-15 85.5 84 56.0
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 7.0e-15 84.3 91 50.5
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 3.5e-14 82.0 107 45.8
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 4.5e-14 81.6 127 43.3
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 7.7e-14 80.9 130 43.8
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.0e-13 80.5 104 45.2
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 1.7e-13 79.7 113 46.0
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 3.8e-13 78.6 139 38.8
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 1.4e-10 70.1 107 42.1
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 3.7e-08 62.0 76 48.7


User provided reference genes

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