Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.0e-50 202.2 106 100.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.0e-50 202.2 106 100.0
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.2e-45 184.9 116 87.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 9.5e-45 183.3 106 90.6
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.8e-43 177.2 106 87.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.6e-42 175.3 106 84.0
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.8e-41 171.8 106 84.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 6.3e-41 170.6 106 84.0
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.1e-40 167.9 107 83.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.0e-39 165.6 106 80.2
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.5e-37 158.7 106 80.2
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.3e-37 158.3 106 79.2
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.8e-36 155.2 106 77.4
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 4.7e-36 154.5 99 82.8
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.1e-36 154.1 106 73.6
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-35 151.8 106 78.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.3e-33 146.4 109 76.1
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.9e-33 145.2 108 73.1
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.1e-32 143.3 108 73.1
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.8e-32 142.5 106 73.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.8e-32 142.5 106 71.7
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 7.8e-31 137.1 133 62.4
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.7e-30 136.0 128 63.3
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 3.0e-30 135.2 109 69.7
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.5e-29 132.1 80 86.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 3.3e-29 131.7 80 83.8
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.8e-26 120.9 93 67.7
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.9e-24 115.9 106 61.3
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.4e-24 115.5 93 66.7
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.1e-24 114.8 104 60.6
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.2e-23 113.2 92 63.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.0e-23 112.5 93 67.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 2.7e-23 112.1 106 61.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.5e-23 111.7 93 64.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.5e-23 111.7 93 64.5
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.5e-23 111.7 92 63.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.5e-21 105.5 100 61.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.3e-21 105.1 98 59.2
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.6e-21 104.4 100 60.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 7.3e-21 104.0 80 67.5
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 9.5e-21 103.6 98 62.2
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.6e-20 101.7 97 57.7
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.7e-20 101.3 98 59.2
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.2e-20 100.9 99 54.5
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.2e-20 100.9 102 52.9
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.1e-19 100.1 93 60.2
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.1e-19 100.1 98 56.1
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.4e-19 99.8 106 54.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.3e-19 99.0 100 55.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.3e-19 99.0 94 54.3
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 3.1e-19 98.6 94 54.3
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 3.1e-19 98.6 103 53.4
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 3.1e-19 98.6 98 56.1
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.0e-19 98.2 81 60.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 4.0e-19 98.2 92 57.6
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.2e-19 97.8 95 57.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 8.9e-19 97.1 93 55.9
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 8.9e-19 97.1 96 58.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.2e-18 96.7 106 51.9
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.5e-18 96.3 111 49.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.0e-18 95.9 90 60.0
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 3.4e-18 95.1 93 57.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 5.8e-18 94.4 106 53.8
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.8e-18 94.4 97 52.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 5.8e-18 94.4 106 50.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 7.5e-18 94.0 94 56.4
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 9.8e-18 93.6 93 55.9
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.8e-18 93.6 95 53.7
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.3e-17 93.2 80 63.8
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.7e-17 92.8 107 53.3
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.2e-17 92.4 106 50.9
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.9e-17 92.0 97 54.6
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-17 91.7 97 51.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-17 91.7 97 51.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 4.9e-17 91.3 98 51.0
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.4e-17 90.9 103 49.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 8.3e-17 90.5 102 51.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.3e-17 90.5 108 49.1
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.4e-16 89.7 97 52.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.9e-16 89.4 107 49.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.4e-16 89.0 105 51.4
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.2e-16 88.6 56 82.1
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.2e-16 88.6 94 52.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.2e-16 88.6 107 48.6
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.4e-16 87.8 104 51.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 7.1e-16 87.4 101 51.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 7.1e-16 87.4 94 51.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.1e-16 87.4 83 56.6
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 7.1e-16 87.4 106 49.1
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 9.2e-16 87.0 105 49.5
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 9.2e-16 87.0 101 50.5
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.2e-15 86.7 90 53.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.2e-15 86.7 104 50.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.6e-15 86.3 92 53.3
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.6e-15 86.3 90 50.0
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.1e-15 85.9 89 51.7
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.1e-15 85.9 80 56.2
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.7e-15 85.5 91 51.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.7e-15 85.5 93 51.6
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 6.0e-15 84.3 96 51.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.0e-14 83.6 96 50.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.0e-14 83.6 107 49.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.0e-14 83.6 84 57.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.3e-14 83.2 63 63.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 91 48.4
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.7e-14 82.8 76 56.6
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.3e-14 82.4 82 54.9
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.3e-14 82.4 93 51.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.3e-14 82.4 88 48.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 5.1e-14 81.3 104 45.2
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 6.6e-14 80.9 70 62.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 6.6e-14 80.9 93 48.4
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 8.6e-14 80.5 79 58.2
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.1e-13 80.1 95 47.4
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.1e-13 80.1 92 51.1
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.5e-13 79.7 95 45.3
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.9e-13 79.3 94 52.1
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.9e-13 79.3 74 56.8
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.9e-13 79.3 75 56.0
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.9e-13 79.3 97 45.4
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-13 79.0 93 49.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 5.6e-13 77.8 73 54.8
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 7.3e-13 77.4 78 52.6
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.5e-13 77.0 87 50.6
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.2e-12 76.6 54 66.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.1e-12 75.9 93 46.2
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 2.8e-12 75.5 92 44.6
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.6e-12 75.1 82 50.0
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 4.7e-12 74.7 97 47.4
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 6.2e-12 74.3 54 64.8
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.1e-11 73.6 94 51.1
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-11 73.2 93 48.4
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-11 73.2 93 48.4
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.4e-11 73.2 93 45.2
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.8e-11 72.8 89 51.7
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-11 72.4 54 63.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.1e-11 72.0 92 46.7
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.0e-11 71.6 92 47.8
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 5.2e-11 71.2 74 48.6
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 6.8e-11 70.9 50 66.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.2e-10 70.1 69 55.1
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 2.6e-10 68.9 94 47.9
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 3.4e-10 68.6 107 44.9
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 9.9e-10 67.0 99 43.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 9.9e-10 67.0 78 43.6
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.3e-09 66.6 70 55.7
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.8e-09 65.1 54 59.3
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.4e-09 63.9 78 50.0
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-08 63.5 46 63.0
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.9e-08 62.8 93 43.0
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.2e-08 62.0 97 41.2
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 4.1e-08 61.6 77 46.8
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 4.1e-08 61.6 96 43.8
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 3.5e-07 58.5 102 40.2
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 1.3e-06 56.6 106 36.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.9e-06 55.1 65 44.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.6e-06 54.3 90 38.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 6.6e-06 54.3 67 46.3
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 6.6e-06 54.3 107 40.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 8.6e-06 53.9 67 44.8


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