Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.3e-79 299.7 150 100.0
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.3e-79 299.7 150 100.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 6.4e-71 270.8 147 93.9
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 4.3e-51 204.9 195 56.9
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.2e-50 203.4 195 55.9
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 1.2e-50 203.4 198 55.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.6e-50 203.0 195 56.4
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.6e-50 203.0 195 56.4
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.1e-50 202.6 191 56.0
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 2.1e-50 202.6 195 55.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 2.8e-50 202.2 195 55.9
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 2.4e-49 199.1 194 56.2
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 3.1e-49 198.7 196 55.6
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 3.1e-49 198.7 193 56.0
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.9e-46 189.5 194 51.5
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 9.3e-46 187.2 193 51.3
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.7e-45 185.7 192 53.1
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.9e-43 179.5 194 51.0
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.8e-42 175.6 183 54.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 6.2e-42 174.5 197 48.2
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 5.3e-41 171.4 185 48.1
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 6.9e-41 171.0 179 54.2
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.9e-41 171.0 198 51.5
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 9.0e-41 170.6 191 48.2
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 2.6e-40 169.1 196 47.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 3.4e-40 168.7 200 47.0
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 5.8e-40 167.9 192 47.9
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 5.8e-40 167.9 200 47.0
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 9.9e-40 167.2 199 47.2
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 9.9e-40 167.2 192 47.9
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.3e-39 166.8 192 47.9
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 1.7e-39 166.4 192 46.4
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-39 166.4 192 47.4
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.9e-39 164.9 191 46.6
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.9e-39 164.9 191 47.6
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.4e-39 164.5 192 44.3
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.1e-38 163.7 179 52.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.1e-38 163.7 179 52.0
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.4e-38 163.3 193 45.6
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.4e-38 163.3 191 45.5
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.9e-38 162.9 199 46.2
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.4e-38 162.5 192 44.3
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.4e-38 162.5 192 47.4
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.4e-38 162.5 192 44.3
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.2e-38 162.2 196 45.4
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 5.4e-38 161.4 192 44.8
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 5.4e-38 161.4 192 46.9
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 7.1e-38 161.0 192 45.3
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.1e-38 161.0 193 47.2
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 7.1e-38 161.0 192 47.4
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 9.3e-38 160.6 188 45.7
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 1.2e-37 160.2 193 45.6
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.6e-37 159.8 212 42.9
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.6e-37 159.8 196 45.4
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 2.1e-37 159.5 193 43.5
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 2.1e-37 159.5 194 46.4
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 3.5e-37 158.7 196 43.9
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 3.5e-37 158.7 196 44.4
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.5e-37 158.7 193 44.6
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 7.9e-37 157.5 192 44.3
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.3e-36 156.0 191 42.9
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 3.0e-36 155.6 193 43.5
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 3.0e-36 155.6 195 43.1
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.0e-36 155.6 189 41.8
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 3.0e-36 155.6 190 43.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.0e-36 155.6 194 44.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.0e-36 155.6 191 43.5
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 3.9e-36 155.2 196 43.4
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.9e-36 155.2 193 42.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.9e-36 155.2 187 43.3
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.1e-36 154.8 191 45.0
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 5.1e-36 154.8 192 42.2
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.1e-36 154.8 192 44.3
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.1e-36 154.8 193 44.0
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 6.7e-36 154.5 186 44.6
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 6.7e-36 154.5 196 42.9
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 6.7e-36 154.5 192 43.8
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 1.1e-35 153.7 192 45.3
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.1e-35 153.7 192 44.3
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.1e-35 153.7 192 44.3
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.5e-35 153.3 192 45.8
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.5e-35 153.3 194 41.8
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.9e-35 152.9 196 43.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.5e-35 152.5 192 43.8
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 4.3e-35 151.8 186 45.7
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.6e-35 151.4 193 43.0
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.6e-35 151.4 193 43.0
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.6e-35 151.4 191 45.0
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 7.4e-35 151.0 182 45.6
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 7.4e-35 151.0 190 42.6
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 9.6e-35 150.6 182 47.8
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.3e-34 150.2 193 44.0
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.1e-34 149.4 183 44.3
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 2.1e-34 149.4 192 42.2
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.1e-34 149.4 193 43.0
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.1e-34 149.4 192 43.8
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.8e-34 149.1 192 43.2
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 8.1e-34 147.5 191 40.3
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.1e-33 147.1 198 39.9
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.4e-33 146.0 195 40.5
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.3e-33 144.8 179 42.5
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.2e-32 143.7 188 41.0
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 4.5e-32 141.7 185 44.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 9.9e-32 140.6 187 41.2
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 9.9e-32 140.6 187 41.2
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 9.9e-32 140.6 182 41.2
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 9.9e-32 140.6 184 41.8
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.2e-31 139.4 192 40.1
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.4e-30 136.7 174 48.3
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.4e-30 136.0 112 57.1
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.2e-30 135.6 112 56.2
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 4.2e-30 135.2 179 43.6
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 9.3e-30 134.0 112 56.2
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.6e-29 133.3 266 34.2
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.7e-29 132.5 191 39.3
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.8e-28 129.8 178 41.6
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.5e-27 126.7 110 54.5
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.5e-27 125.9 106 52.8
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 4.3e-27 125.2 187 39.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.6e-27 124.8 198 37.4
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 2.1e-26 122.9 192 34.4
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.8e-26 122.5 199 38.2
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.8e-26 121.7 108 51.9
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 4.8e-26 121.7 192 35.9
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.2e-26 121.3 152 42.1
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.1e-25 120.6 167 40.7
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.1e-25 119.0 153 42.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 2.6e-24 115.9 91 56.0
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 5.8e-24 114.8 195 35.9
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 5.8e-24 114.8 170 35.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.7e-23 113.2 208 34.6
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 8.4e-23 110.9 209 34.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 8.4e-23 110.9 98 50.0
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 8.4e-23 110.9 186 36.6
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.1e-22 107.8 182 36.3
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 7.1e-22 107.8 265 30.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.7e-21 105.9 181 35.4
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 4.6e-21 105.1 156 41.0
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 6.7e-20 101.3 111 51.4
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 8.7e-20 100.9 185 33.5
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 2.5e-19 99.4 181 33.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.3e-19 99.0 149 38.3
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.3e-18 97.1 150 38.0
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.6e-18 96.7 150 38.7
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 6.3e-18 94.7 96 47.9
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 1.8e-17 93.2 150 36.7
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.8e-17 93.2 108 38.9
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 3.8e-15 85.5 139 38.1
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 5.0e-15 85.1 110 43.6
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.6e-13 80.1 108 44.4
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.8e-12 76.6 51 60.8
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.5e-11 72.8 45 66.7
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 3.3e-11 72.4 134 32.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.8e-09 66.6 157 31.8


User provided reference genes

Program Settings