Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41808 Brassica carinata HOM05D002761 ORTHO05D032259 1.3e-48 196.1 98 100.0
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 5.5e-23 110.9 65 84.6
BcaC07g41804 Brassica carinata HOM05D002761 ORTHO05D003351 5.5e-23 110.9 65 84.6
BolC8t52408H Brassica oleracea HOM05D048851 ORTHO05D032259 2.7e-22 108.6 52 100.0
C08p48700 Brassica napus HOM05D048851 ORTHO05D032259 6.1e-22 107.5 52 98.1
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 2.4e-18 95.5 65 70.8
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 2.4e-18 95.5 65 70.8
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 2.4e-18 95.5 65 70.8
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 2.4e-18 95.5 65 70.8
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 7.0e-18 94.0 65 69.2
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 7.0e-18 94.0 65 69.2
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 9.1e-18 93.6 63 68.3
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.6e-17 92.8 65 67.7
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 2.0e-17 92.4 65 70.8
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 2.0e-17 92.4 65 66.2
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 2.0e-17 92.4 65 66.2
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 2.0e-17 92.4 65 66.2
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 3.5e-17 91.7 65 69.2
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 3.5e-17 91.7 65 64.6
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 4.5e-17 91.3 65 67.7
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 4.5e-17 91.3 63 66.7
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 4.5e-17 91.3 65 69.2
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 5.9e-17 90.9 63 65.1
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 5.9e-17 90.9 63 66.7
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 7.7e-17 90.5 65 66.2
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 7.7e-17 90.5 65 66.2
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 7.7e-17 90.5 65 66.2
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 7.7e-17 90.5 65 66.2
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 1.3e-16 89.7 65 64.6
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 1.7e-16 89.4 65 66.2
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 1.7e-16 89.4 65 66.2
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 1.7e-16 89.4 65 66.2
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 2.2e-16 89.0 63 68.3
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 2.2e-16 89.0 63 65.1
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 2.9e-16 88.6 65 66.2
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 2.9e-16 88.6 65 66.2
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 2.9e-16 88.6 65 66.2
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 2.9e-16 88.6 65 66.2
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 3.8e-16 88.2 65 66.2
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 5.0e-16 87.8 63 65.1
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 5.0e-16 87.8 63 63.5
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 5.0e-16 87.8 63 63.5
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 5.0e-16 87.8 65 64.6
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 6.5e-16 87.4 63 65.1
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 6.5e-16 87.4 63 63.5
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 8.5e-16 87.0 63 63.5
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 8.5e-16 87.0 65 64.6
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 8.5e-16 87.0 63 63.5
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 1.1e-15 86.7 65 60.0
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 1.1e-15 86.7 73 56.2
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.1e-15 86.7 73 56.2
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.1e-15 86.7 73 56.2
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.1e-15 86.7 73 56.2
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 1.1e-15 86.7 65 63.1
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 1.5e-15 86.3 63 65.1
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 1.5e-15 86.3 63 63.5
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 1.9e-15 85.9 63 66.7
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 1.9e-15 85.9 63 65.1
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 2.5e-15 85.5 63 63.5
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.5e-15 85.5 63 61.9
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 2.5e-15 85.5 64 64.1
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 2.5e-15 85.5 63 63.5
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 2.5e-15 85.5 65 64.6
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 3.2e-15 85.1 63 63.5
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 3.2e-15 85.1 63 65.1
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 4.2e-15 84.7 63 65.1
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 4.2e-15 84.7 65 61.5
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 4.2e-15 84.7 63 65.1
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 4.2e-15 84.7 65 63.1
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 4.2e-15 84.7 63 65.1
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 4.2e-15 84.7 63 65.1
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 4.2e-15 84.7 63 63.5
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 65.1
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 65.1
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 65.1
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 65.1
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 63.5
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 5.5e-15 84.3 63 65.1
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 7.2e-15 84.0 65 63.1
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 7.2e-15 84.0 63 65.1
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 7.2e-15 84.0 63 63.5
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 9.4e-15 83.6 63 65.1
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 1.2e-14 83.2 63 63.5
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 1.2e-14 83.2 63 63.5
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 1.2e-14 83.2 63 63.5
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 1.2e-14 83.2 63 65.1
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 1.2e-14 83.2 63 63.5
BcaC05g24852 Brassica carinata HOM05D002761 ORTHO05D003351 1.6e-14 82.8 54 75.9
C05p08980 Brassica napus HOM05D002761 ORTHO05D003351 1.6e-14 82.8 54 75.9
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 1.6e-14 82.8 65 61.5
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 2.1e-14 82.4 63 65.1
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 2.1e-14 82.4 65 61.5
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 2.7e-14 82.0 63 63.5
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 2.7e-14 82.0 65 63.1
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 2.7e-14 82.0 64 62.5
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.7e-14 82.0 63 63.5
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 2.7e-14 82.0 65 63.1
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 4.7e-14 81.3 63 63.5
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 4.7e-14 81.3 63 63.5
Lj5A652T14 Lonicera japonica HOM05D002761 ORTHO05D003351 4.7e-14 81.3 74 56.8
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 4.7e-14 81.3 63 63.5
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 6.1e-14 80.9 63 63.5
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 6.1e-14 80.9 63 61.9
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 8.0e-14 80.5 63 63.5
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 8.0e-14 80.5 63 60.3
Lj5A633T18 Lonicera japonica HOM05D002761 ORTHO05D003351 8.0e-14 80.5 74 56.8
Lj5A655T26 Lonicera japonica HOM05D002761 ORTHO05D003351 8.0e-14 80.5 74 56.8
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 8.0e-14 80.5 63 63.5
Lj5A650G23 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-13 80.1 74 56.8
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-13 80.1 74 56.8
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-13 80.1 74 55.4
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 1.0e-13 80.1 63 61.9
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 1.4e-13 79.7 62 64.5
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.4e-13 79.7 73 53.4
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 1.4e-13 79.7 63 58.7
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 1.8e-13 79.3 63 63.5
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 1.8e-13 79.3 63 61.9
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 1.8e-13 79.3 63 61.9
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 1.8e-13 79.3 63 61.9
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 2.3e-13 79.0 63 61.9
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.3e-13 79.0 63 57.1
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 3.0e-13 78.6 65 60.0
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 3.0e-13 78.6 75 54.7
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 3.0e-13 78.6 63 58.7
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 3.0e-13 78.6 62 62.9
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 4.0e-13 78.2 63 61.9
Lj5A657T12 Lonicera japonica HOM05D002761 ORTHO05D003351 4.0e-13 78.2 63 63.5
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 4.0e-13 78.2 65 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2494 Anthoceros agrestis HOM05D002761 ORTHO05D003351 8.8e-13 77.0 63 63.5
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 8.8e-13 77.0 68 60.3
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 1.2e-12 76.6 74 54.1
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 1.2e-12 76.6 63 58.7
AUR62022701 Chenopodium quinoa HOM05D002761 ORTHO05D003351 1.5e-12 76.3 68 55.9
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 1.5e-12 76.3 65 60.0
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 2.0e-12 75.9 63 60.3
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 2.0e-12 75.9 65 58.5
SMO111G0069 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.0e-12 75.9 63 55.6
SMO351G0639 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.6e-12 75.5 63 55.6
AagrBONN_evm.TU.Sc2ySwM_344.827 Anthoceros agrestis HOM05D002761 ORTHO05D003351 3.4e-12 75.1 63 61.9
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 3.4e-12 75.1 62 61.3
SMO111G0222 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 4.4e-12 74.7 63 54.0
QL08p012793 Quercus lobata HOM05D002761 ORTHO05D003351 5.7e-12 74.3 57 59.6
QL08p012947 Quercus lobata HOM05D002761 ORTHO05D003351 7.5e-12 73.9 57 59.6
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 1.3e-11 73.2 94 43.6
Pp3c4_17390 Physcomitrium patens HOM05D002761 ORTHO05D003351 1.7e-11 72.8 65 56.9
Aa31sc1035G10 Aethionema arabicum HOM05D002761 ORTHO05D003351 2.2e-11 72.4 57 61.4
Lj5A654G16 Lonicera japonica HOM05D002761 ORTHO05D003351 2.2e-11 72.4 94 43.6
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 2.2e-11 72.4 84 47.6
Lsat_1_v5_gn_4_165020 Lactuca sativa HOM05D002761 ORTHO05D003351 3.7e-11 71.6 65 53.8
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 3.7e-11 71.6 65 53.8
Cre17.g726100 Chlamydomonas reinhardtii HOM05D002761 ORTHO05D003351 4.8e-11 71.2 63 54.0
Lj4A473G33 Lonicera japonica HOM05D002761 ORTHO05D003351 4.8e-11 71.2 57 61.4
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 4.8e-11 71.2 65 56.9
Nitab4.5_0001579g0100 Nicotiana tabacum HOM05D002761 ORTHO05D003351 8.3e-11 70.5 60 58.3
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 1.1e-10 70.1 65 55.4
Lj5A618G15 Lonicera japonica HOM05D002761 ORTHO05D003351 1.8e-10 69.3 76 51.3
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 1.8e-10 69.3 65 56.9
MBI16_g07686_MAGBIO Magnolia biondii HOM05D002761 ORTHO05D003351 2.4e-10 68.9 59 55.9
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 2.4e-10 68.9 65 55.4
HPP92_003668 Vanilla planifolia HOM05D002761 ORTHO05D003351 3.1e-10 68.6 57 57.9
Lj5A669G11 Lonicera japonica HOM05D002761 ORTHO05D003351 9.1e-10 67.0 75 49.3
arahy.Tifrunner.gnm1.ann1.BB8XW9 Arachis hypogaea HOM05D002761 ORTHO05D003351 5.9e-09 64.3 51 60.8
Cfa023620 Carpinus fangiana HOM05D002761 ORTHO05D003351 5.9e-09 64.3 63 54.0
HanXRQChr09g0263631 Helianthus annuus HOM05D002761 ORTHO05D003351 7.7e-09 63.9 51 60.8
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 1.7e-08 62.8 68 50.0
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 1.7e-08 62.8 68 50.0
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 6.5e-08 60.8 62 51.6
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 8.5e-08 60.5 70 47.1
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 1.1e-07 60.1 66 48.5
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 9.4e-07 57.0 65 47.7


User provided reference genes

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