Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1648.3 876 100.0
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1525.0 876 94.9
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1525.0 876 94.9
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1429.5 942 84.2
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1424.5 951 82.9
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1243.4 888 79.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1241.9 888 79.6
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1235.7 889 78.6
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1231.5 897 78.5
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 0.0e+00 1230.7 900 76.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1224.2 917 75.8
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1219.1 900 77.8
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1209.1 898 76.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1191.0 899 74.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1190.6 900 76.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1169.5 831 78.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1127.9 925 70.9
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.3e-288 996.5 899 65.1
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 7.8e-270 934.1 891 62.7
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.3e-269 932.6 895 62.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.1e-267 926.0 881 62.5
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.5e-257 893.3 896 61.5
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.9e-236 823.2 886 58.1
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.7e-195 686.0 922 47.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.0e-193 680.2 927 49.4
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 4.5e-193 679.1 928 48.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.7e-187 660.6 935 46.2
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.1e-186 657.9 936 46.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.1e-186 656.4 968 45.8
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.3e-184 651.0 923 47.2
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.3e-184 651.0 931 47.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-183 646.7 919 47.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.3e-181 640.2 937 46.4
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.2e-181 639.0 899 47.3
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.8e-181 638.6 935 46.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 8.9e-181 638.3 922 46.4
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.7e-179 634.0 923 48.0
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.2e-179 633.6 906 47.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 4.9e-179 632.5 942 45.5
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 8.3e-179 631.7 913 46.5
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 1.8e-178 630.6 911 47.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 3.2e-178 629.8 924 46.3
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.0e-178 628.6 940 44.9
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 7.0e-178 628.6 936 45.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.9e-175 620.5 928 44.8
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 5.6e-175 619.0 917 45.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.2e-174 615.5 820 49.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.0e-173 612.8 960 44.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 5.2e-173 612.5 963 44.8
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 6.8e-173 612.1 924 45.8
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-172 610.1 923 45.7
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 4.4e-172 609.4 904 46.9
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 9.8e-172 608.2 914 46.1
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.2e-171 607.1 937 45.1
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.3e-171 605.1 926 44.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.6e-169 600.9 931 45.6
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.0e-169 600.5 829 48.3
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.7e-169 600.1 833 48.1
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 7.8e-169 598.6 931 45.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.0e-168 598.2 937 44.5
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.3e-168 597.8 833 46.5
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-167 594.7 908 46.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.5e-167 594.3 828 46.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.9e-167 594.0 1001 42.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.9e-167 594.0 942 45.0
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 3.3e-167 593.2 915 43.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.2e-166 591.3 792 47.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-166 591.3 937 44.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.1e-166 590.5 810 47.8
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.8e-166 590.1 813 47.8
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 3.6e-166 589.7 1014 42.0
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.7e-166 589.3 952 44.1
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 4.7e-166 589.3 991 42.4
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.7e-166 589.3 1000 43.1
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.2e-166 589.0 796 46.4
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.4e-165 587.8 950 43.6
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.8e-165 587.4 916 44.1
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.3e-165 587.0 918 43.2
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.2e-165 585.9 828 46.4
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.8e-165 585.5 985 43.8
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.6e-164 583.6 981 43.5
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 2.6e-164 583.6 961 43.5
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.7e-163 580.9 872 44.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 4.9e-163 579.3 894 44.7
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.9e-163 579.3 981 42.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.1e-162 578.2 1021 43.0
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-162 577.0 981 42.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 3.2e-162 576.6 959 43.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.6e-161 574.3 805 45.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-161 574.3 981 43.1
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 3.5e-161 573.2 821 46.0
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 7.8e-161 572.0 874 43.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.3e-160 571.2 1059 41.5
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.1e-160 569.3 920 42.6
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 4.7e-158 562.8 941 42.4
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 8.9e-157 558.5 929 43.4
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 2.0e-156 557.4 865 43.8
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 3.4e-156 556.6 884 45.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.1e-154 551.6 839 45.4
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 3.0e-152 543.5 943 41.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.1e-152 542.7 834 43.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 6.6e-152 542.3 875 42.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.5e-151 541.2 887 41.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.9e-151 540.8 801 43.3
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.3e-151 540.0 822 43.6
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.6e-151 538.5 822 43.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.6e-150 537.7 801 44.2
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-150 537.0 912 42.5
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.1e-150 535.4 951 40.7
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.1e-149 535.0 850 45.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.1e-149 535.0 1003 39.7
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 3.1e-149 533.5 999 41.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.0e-144 518.5 777 44.1
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.3e-144 518.1 897 41.5
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.3e-143 513.1 841 42.2
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 4.3e-143 513.1 910 41.5
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.1e-138 498.4 837 41.1
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.5e-135 488.0 1016 37.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.5e-135 487.3 821 41.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-134 484.6 916 39.1
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 6.2e-134 482.6 897 39.4
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 4.9e-131 473.0 788 43.1
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.7e-129 467.2 845 39.6
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 7.9e-129 465.7 816 40.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.5e-127 461.5 859 39.2
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-116 425.2 940 38.0
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 2.6e-116 424.1 940 37.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.0e-107 395.6 807 37.4
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.0e-104 384.0 837 36.4
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 6.3e-94 349.7 910 32.7
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.0e-92 344.7 837 34.6
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.0e-92 344.7 837 34.6
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 9.4e-90 335.9 541 44.2
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 8.8e-88 329.3 690 36.4
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.4e-80 305.4 366 50.8
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 5.2e-80 303.5 803 33.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-70 271.9 357 48.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.6e-65 254.2 286 50.3
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.9e-62 244.6 177 78.5
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 9.5e-58 229.6 415 41.4
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.6e-50 203.8 979 25.7
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 8.1e-49 199.9 276 46.7
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 5.8e-47 193.7 474 35.0
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.9e-45 188.7 422 37.2
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.0e-43 181.4 384 38.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-40 172.9 260 40.0
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.9e-35 154.5 486 29.8
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-32 146.4 162 56.2
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.0e-31 142.1 201 42.3
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.9e-27 127.9 91 71.4
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.5e-26 125.2 130 54.6
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.6e-25 122.5 178 47.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-25 121.3 111 56.8
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 5.8e-23 114.0 157 43.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.8e-22 111.3 93 69.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.1e-21 107.1 125 52.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 4.3e-18 97.8 89 59.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 8.1e-17 93.6 70 67.1
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.8e-16 92.4 89 57.3
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 5.3e-16 90.9 71 59.2
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 9.0e-16 90.1 111 50.5
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 9.0e-16 90.1 64 70.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 8.4e-14 83.6 57 75.4
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-13 82.0 106 43.4
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.5e-13 82.0 84 56.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 4.6e-12 77.8 119 42.0
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 6.0e-12 77.4 104 48.1
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-11 76.6 114 40.4
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.8e-11 75.9 92 50.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.7e-11 73.6 66 65.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-10 71.6 96 47.9
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.8e-09 68.6 126 39.7
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 4.0e-08 64.7 62 56.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 6.9e-08 63.9 57 50.9
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.2e-07 63.2 90 46.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.2e-07 63.2 70 47.1
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.2e-06 58.9 124 33.1
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.8e-06 58.2 42 57.1


User provided reference genes

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