Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41777 Brassica carinata HOM05D006443 ORTHO05D007797 4.7e-48 194.1 93 100.0
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.3e-08 63.2 30 90.0
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 1.3e-08 63.2 30 90.0
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 2.1e-08 62.4 30 86.7
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 2.8e-08 62.0 30 86.7
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 3.6e-08 61.6 30 86.7
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 3.6e-08 61.6 30 83.3
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 4.8e-08 61.2 30 83.3
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 6.2e-08 60.8 30 83.3
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 1.2e-06 56.6 37 64.9
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 1.2e-06 56.6 29 82.8
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 1.2e-06 56.6 31 77.4
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 76.7
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 1.5e-06 56.2 30 80.0
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 2.0e-06 55.8 30 76.7
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 2.0e-06 55.8 30 76.7
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 2.0e-06 55.8 30 76.7
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 2.0e-06 55.8 30 76.7
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 2.0e-06 55.8 30 76.7
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.4e-06 55.1 30 76.7
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.4e-06 55.1 30 76.7
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 4.4e-06 54.7 30 76.7
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 5.8e-06 54.3 43 55.8
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 5.8e-06 54.3 43 55.8
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 5.8e-06 54.3 43 55.8
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 7.6e-06 53.9 68 41.2
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 7.6e-06 53.9 30 73.3
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 7.6e-06 53.9 30 73.3
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 7.6e-06 53.9 30 73.3
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 9.9e-06 53.5 30 73.3
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 9.9e-06 53.5 30 76.7
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 9.9e-06 53.5 30 80.0
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 9.9e-06 53.5 52 48.1
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 9.9e-06 53.5 30 76.7
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 9.9e-06 53.5 30 76.7


User provided reference genes

Program Settings