Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 1.4e-59 232.6 112 100.0
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 1.4e-59 232.6 112 100.0
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 1.4e-59 232.6 112 100.0
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-54 214.2 113 92.9
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 3.5e-50 201.4 105 93.3
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 3.9e-49 198.0 105 92.4
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 2.5e-48 195.3 105 91.4
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 2.5e-48 195.3 105 91.4
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 9.7e-48 193.4 111 84.7
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 4.1e-46 188.0 112 83.9
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 2.0e-45 185.7 111 83.8
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 2.0e-45 185.7 111 83.8
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 5.9e-45 184.1 112 83.0
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 7.6e-45 183.7 111 82.0
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 6.5e-44 180.6 111 81.1
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 6.5e-44 180.6 111 81.1
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 6.5e-44 180.6 111 81.1
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 2.1e-42 175.6 112 80.4
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 3.6e-42 174.9 111 78.4
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 3.6e-42 174.9 112 78.6
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 7.9e-42 173.7 110 78.2
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 2.2e-36 155.6 112 73.2
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 9.4e-35 150.2 111 72.1
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 8.8e-25 117.1 77 76.6
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 2.2e-23 112.5 67 77.6
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 1.9e-19 99.4 103 50.5
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 5.5e-19 97.8 70 61.4
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 7.2e-19 97.4 107 49.5
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 2.3e-17 92.4 103 45.6
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 5.2e-17 91.3 99 47.5
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 5.2e-17 91.3 79 55.7
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 6.7e-17 90.9 97 48.5
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 8.8e-17 90.5 98 46.9
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 8.8e-17 90.5 97 48.5
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 1.2e-16 90.1 70 55.7
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 2.6e-16 89.0 74 55.4
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 3.3e-16 88.6 97 47.4
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 4.4e-16 88.2 64 57.8
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 4.4e-16 88.2 98 45.9
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 7.5e-16 87.4 79 49.4
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 9.7e-16 87.0 78 51.3
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 2.8e-15 85.5 64 59.4
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 3.7e-15 85.1 99 42.4
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 4.8e-15 84.7 98 44.9
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 6.3e-15 84.3 103 40.8
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 8.2e-15 84.0 91 44.0
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 3.1e-14 82.0 73 47.9
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 3.1e-14 82.0 107 43.0
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 3.1e-14 82.0 100 45.0
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 5.3e-14 81.3 103 40.8
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 5.3e-14 81.3 73 49.3
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 5.3e-14 81.3 100 43.0
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 9.1e-14 80.5 71 52.1
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 9.1e-14 80.5 100 43.0
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.2e-13 80.1 101 45.5
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 1.6e-13 79.7 73 50.7
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.6e-13 79.7 105 42.9
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 1.6e-13 79.7 60 61.7
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 4.5e-13 78.2 103 40.8
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 5.9e-13 77.8 97 42.3
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.3e-12 76.6 105 41.0
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 1.3e-12 76.6 79 48.1
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 2.9e-12 75.5 72 47.2
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 6.5e-12 74.3 73 47.9
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 8.5e-12 73.9 102 40.2
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 8.5e-12 73.9 102 40.2
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 1.1e-11 73.6 101 38.6
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 1.5e-11 73.2 102 40.2
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 1.9e-11 72.8 66 51.5
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.2e-10 70.1 90 38.9
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 2.7e-10 68.9 66 48.5
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 3.6e-10 68.6 102 36.3
BolC8t49147H Brassica oleracea HOM05D007926 ORTHO05D009983 4.7e-10 68.2 35 88.6
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 3.0e-09 65.5 70 47.1
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 5.2e-09 64.7 66 45.5
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 1.2e-08 63.5 89 37.1
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.4e-08 62.0 111 32.4
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 1.7e-07 59.7 65 46.2
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 3.7e-07 58.5 66 43.9
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 1.8e-06 56.2 46 47.8
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 2.4e-06 55.8 96 36.5
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 7.0e-06 54.3 67 41.8


User provided reference genes

Program Settings