Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41726 Brassica carinata HOM05D001827 ORTHO05D001790 1.6e-64 250.4 261 100.0
BcaNung05493 Brassica carinata HOM05D001827 ORTHO05D001790 2.2e-55 219.9 255 84.7
C08p47640 Brassica napus HOM05D001827 ORTHO05D001790 7.2e-54 214.9 261 92.7
Sp1g10820 Schrenkiella parvula HOM05D001827 ORTHO05D001790 2.2e-50 203.4 261 83.1
AL1G23420 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 4.1e-49 199.1 261 83.1
A08p32960 Brassica napus HOM05D001827 ORTHO05D001790 5.4e-49 198.7 259 80.3
BraA08t35216Z Brassica rapa HOM05D001827 ORTHO05D001790 5.4e-49 198.7 259 81.5
Thhalv10007286m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 7.7e-48 194.9 261 81.6
AT1G12150 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 5.0e-47 192.2 258 82.9
BolC8t52305H Brassica oleracea HOM05D001827 ORTHO05D001790 5.0e-47 192.2 246 93.1
BolC8t49155H Brassica oleracea HOM05D001827 ORTHO05D001790 6.5e-47 191.8 261 77.0
CARHR012500 Cardamine hirsuta HOM05D001827 ORTHO05D001790 2.5e-46 189.9 257 72.8
C08p15260 Brassica napus HOM05D001827 ORTHO05D001790 3.2e-46 189.5 261 76.6
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.8e-44 183.7 249 90.8
Carub.0001s1184 Capsella rubella HOM05D001827 ORTHO05D001790 8.3e-42 174.9 261 72.4
Aa31LG2G12390 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.6e-40 170.6 257 66.9
THA.LOC104815472 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 6.6e-39 165.2 261 67.4
BcaB03g13203 Brassica carinata HOM05D001827 ORTHO05D001790 1.2e-35 154.5 261 62.1
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.2e-27 127.9 249 81.1
Thecc.06G241600 Theobroma cacao HOM05D001827 ORTHO05D001790 8.1e-21 105.1 257 47.1
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 1.8e-20 104.0 260 32.7
Atru.chr1.2237 Acer truncatum HOM05D001827 ORTHO05D001790 3.1e-20 103.2 257 33.1
Gorai.011G008400 Gossypium raimondii HOM05D001827 ORTHO05D001790 1.5e-19 100.9 257 45.5
Gohir.A10G007800 Gossypium hirsutum HOM05D001827 ORTHO05D001790 4.4e-19 99.4 257 45.1
Manes.09G083200 Manihot esculenta HOM05D001827 ORTHO05D001790 3.2e-17 93.2 256 31.6
Prupe.4G003200 Prunus persica HOM05D001827 ORTHO05D001790 9.2e-17 91.7 277 44.0
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 2.1e-16 90.5 269 36.8
Ciclev10014746m.g Citrus clementina HOM05D001827 ORTHO05D001790 4.6e-16 89.4 258 30.6
TWI77G0847 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 7.8e-16 88.6 255 36.9
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.0e-15 88.2 269 36.8
MD05G1362200 Malus domestica HOM05D001827 ORTHO05D001790 1.7e-15 87.4 279 37.6
TWI63G0386 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 1.7e-15 87.4 255 42.4
CANSAT56G2984 Cannabis sativa HOM05D001827 ORTHO05D001790 2.5e-14 83.6 257 29.6
Duzib235G1271 Durio zibethinus HOM05D001827 ORTHO05D001790 1.2e-13 81.3 258 46.5
BcaC05g25241 Brassica carinata HOM05D001827 ORTHO05D031757 2.8e-13 80.1 52 82.7
C05p11040 Brassica napus HOM05D001827 ORTHO05D031757 2.8e-13 80.1 52 82.7
BolC5t29846H Brassica oleracea HOM05D001827 ORTHO05D031757 2.8e-13 80.1 52 82.7
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 2.3e-12 77.0 255 29.8
Lalb_Chr18g0057361 Lupinus albus HOM05D001827 ORTHO05D001790 2.3e-12 77.0 278 38.8
FAN21G1072 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.1e-12 76.6 79 58.2
FvH4_3g00281 Fragaria vesca HOM05D001827 ORTHO05D001790 8.9e-12 75.1 79 57.0
Potri.016G005200 Populus trichocarpa HOM05D001827 ORTHO05D001790 1.5e-11 74.3 260 37.7
Lalb_Chr15g0088281 Lupinus albus HOM05D001827 ORTHO05D001790 3.4e-11 73.2 275 31.3
RcHm_v2.0_Chr5g0000421 Rosa chinensis HOM05D001827 ORTHO05D001790 5.8e-11 72.4 79 54.4
ClCG01G011200 Citrullus lanatus HOM05D001827 ORTHO05D001790 9.9e-11 71.6 79 54.4
QL05p066984 Quercus lobata HOM05D001827 ORTHO05D001790 1.3e-10 71.2 260 30.4
Sabra16G0010100 Salix brachista HOM05D001827 ORTHO05D001790 2.9e-10 70.1 254 33.1
MD10G1339700 Malus domestica HOM05D001827 ORTHO05D001790 4.9e-10 69.3 277 28.9
Atru.chr1.2239 Acer truncatum HOM05D001827 ORTHO05D001790 1.1e-09 68.2 60 56.7
Gohir.D10G007700 Gossypium hirsutum HOM05D001827 ORTHO05D001790 1.1e-09 68.2 60 58.3
Lj4g0001684 Lotus japonicus HOM05D001827 ORTHO05D001790 1.1e-09 68.2 278 43.2
Cpa.g.sc27.220 Carica papaya HOM05D001827 ORTHO05D001790 1.4e-09 67.8 60 61.7
MELO3C026089.2 Cucumis melo HOM05D001827 ORTHO05D001790 1.9e-09 67.4 79 53.2
Lalb_Chr07g0176921 Lupinus albus HOM05D001827 ORTHO05D001790 1.9e-09 67.4 276 30.4
arahy.Tifrunner.gnm1.ann1.DFDN71 Arachis hypogaea HOM05D001827 ORTHO05D001790 3.2e-09 66.6 74 50.0
arahy.Tifrunner.gnm1.ann1.L6LFU0 Arachis hypogaea HOM05D001827 ORTHO05D001790 5.4e-09 65.9 291 38.8
VMungo1215G0153 Vigna mungo HOM05D001827 ORTHO05D001790 5.4e-09 65.9 275 36.4
arahy.Tifrunner.gnm1.ann1.TX1KI1 Arachis hypogaea HOM05D001827 ORTHO05D001790 1.2e-08 64.7 281 41.3
Phvul.003G087700 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 1.6e-08 64.3 275 34.9
PGR042G0925 Punica granatum HOM05D001827 ORTHO05D001790 2.1e-08 63.9 60 56.7
arahy.Tifrunner.gnm1.ann1.L4SZG2 Arachis hypogaea HOM05D001827 ORTHO05D001790 3.5e-08 63.2 279 30.8
Cfa000026 Carpinus fangiana HOM05D001827 ORTHO05D001790 3.5e-08 63.2 79 49.4
vmacro15728 Vaccinium macrocarpon HOM05D001827 ORTHO05D001790 3.5e-08 63.2 79 49.4
Sed0000061 Sechium edule HOM05D001827 ORTHO05D001790 4.6e-08 62.8 79 48.1
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 6.0e-08 62.4 274 47.1
THA.LOC104806742 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 6.0e-08 62.4 238 45.0
Glyma.17G005200 Glycine max HOM05D001827 ORTHO05D001790 7.8e-08 62.0 79 48.1
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 7.8e-08 62.0 80 47.5
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 7.8e-08 62.0 268 35.8
THA.LOC104815287 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 7.8e-08 62.0 72 52.8
TPR.G17542 Trifolium pratense HOM05D001827 ORTHO05D001790 7.8e-08 62.0 71 49.3
Aa31LG6G30 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.3e-07 61.2 74 47.3
CiPaw.10G082700 Carya illinoinensis HOM05D001827 ORTHO05D001790 1.3e-07 61.2 256 30.1
Medtr4g134110 Medicago truncatula HOM05D001827 ORTHO05D001790 1.3e-07 61.2 274 42.7
VMungo0540G0065 Vigna mungo HOM05D001827 ORTHO05D001790 1.7e-07 60.8 73 49.3
CsaV3_1G015450 Cucumis sativus L. HOM05D001827 ORTHO05D001790 2.3e-07 60.5 271 36.5
Glyma.07G268550 Glycine max HOM05D000879 ORTHO05D001790 2.3e-07 60.5 274 29.9
TPR.G5995 Trifolium pratense HOM05D001827 ORTHO05D001790 2.3e-07 60.5 277 40.8
Medtr2g027130 Medicago truncatula HOM05D001827 ORTHO05D001790 3.0e-07 60.1 73 47.9
Ca_20990_v3 Cicer arietinum L. HOM05D000879 ORTHO05D001790 3.9e-07 59.7 277 43.0
Peaxi162Scf00811g00224 Petunia axillaris HOM05D001827 ORTHO05D001790 3.9e-07 59.7 84 44.0
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 6.6e-07 58.9 274 46.4
Glyma.15G120700 Glycine max HOM05D001827 ORTHO05D001790 6.6e-07 58.9 281 37.0
Lj6g0012256 Lotus japonicus HOM05D001827 ORTHO05D001790 1.1e-06 58.2 73 49.3
Ca_00766_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 1.5e-06 57.8 73 47.9
Sabra06G0003500 Salix brachista HOM05D001827 ORTHO05D001790 2.5e-06 57.0 252 36.9
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 3.3e-06 56.6 62 46.8
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 3.3e-06 56.6 62 46.8
Lalb_Chr12g0195931 Lupinus albus HOM05D001827 ORTHO05D001790 4.3e-06 56.2 61 50.8


User provided reference genes

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