Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.1e-75 286.6 147 100.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 9.3e-75 283.5 145 100.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 1.2e-29 133.7 98 72.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 4.0e-25 118.6 81 77.8
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 8.8e-25 117.5 81 76.5
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.5e-24 116.7 81 75.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 3.4e-24 115.5 81 74.1
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.4e-24 115.5 81 74.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 4.4e-24 115.2 81 74.1
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 7.5e-24 114.4 81 72.8
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 7.5e-24 114.4 81 72.8
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 9.8e-24 114.0 81 74.1
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.3e-23 113.6 81 74.1
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.0e-20 104.0 81 71.6
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.3e-20 103.6 81 70.4
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.4e-17 93.6 80 66.2
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 3.0e-17 92.4 82 65.9
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 4.0e-17 92.0 80 67.5
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 5.2e-17 91.7 81 65.4
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 6.8e-17 91.3 82 64.6
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 6.8e-17 91.3 80 66.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 6.8e-17 91.3 82 64.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 8.9e-17 90.9 80 65.0
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.2e-16 90.5 80 65.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 1.5e-16 90.1 80 65.0
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.5e-16 90.1 80 62.5
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.5e-16 90.1 80 65.0
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 2.0e-16 89.7 80 62.5
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 2.0e-16 89.7 80 62.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.0e-16 89.7 80 65.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 2.6e-16 89.4 80 65.0
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.6e-16 89.4 80 66.2
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 3.4e-16 89.0 87 60.9
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 3.4e-16 89.0 80 65.0
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 4.4e-16 88.6 82 63.4
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 4.4e-16 88.6 80 62.5
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 7.5e-16 87.8 80 61.2
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 7.5e-16 87.8 80 61.2
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.5e-16 87.8 80 63.8
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.5e-16 87.8 80 63.8
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 9.8e-16 87.4 80 61.2
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.8e-16 87.4 80 63.8
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 9.8e-16 87.4 80 62.5
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 62.5
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 62.5
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 60.0
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 63.8
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 62.5
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.3e-15 87.0 80 65.0
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.7e-15 86.7 80 62.5
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.7e-15 86.7 76 65.8
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.7e-15 86.7 80 65.0
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 2.2e-15 86.3 80 58.8
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.2e-15 86.3 80 62.5
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.2e-15 86.3 80 62.5
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 2.2e-15 86.3 80 63.8
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 61.2
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 63.8
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 63.8
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 63.8
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 58.8
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 63.8
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 61.2
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 60.0
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 2.8e-15 85.9 80 63.8
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.7e-15 85.5 80 62.5
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.7e-15 85.5 80 60.0
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 3.7e-15 85.5 80 63.8
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 3.7e-15 85.5 80 63.8
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 4.9e-15 85.1 80 60.0
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 4.9e-15 85.1 80 60.0
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 4.9e-15 85.1 80 60.0
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 6.3e-15 84.7 80 60.0
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 6.3e-15 84.7 80 60.0
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 8.3e-15 84.3 80 60.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.1e-14 84.0 80 61.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.1e-14 84.0 80 60.0
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.4e-14 83.6 80 62.5
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.4e-14 83.6 80 61.2
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.4e-14 83.6 80 58.8
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.4e-14 83.6 80 58.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.8e-14 83.2 80 58.8
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.4e-14 82.8 80 58.8
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.1e-14 82.4 80 60.0
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 3.1e-14 82.4 80 58.8
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.1e-14 82.0 80 57.5
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 5.4e-14 81.6 80 58.8
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 7.0e-14 81.3 80 60.0
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.6e-13 80.1 80 55.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.6e-13 80.1 80 57.5
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.0e-13 79.7 80 58.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.0e-13 79.7 89 52.8
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 5.9e-13 78.2 80 52.5
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 5.9e-13 78.2 80 56.2
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.0e-12 77.4 80 55.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.7e-12 76.6 80 52.5
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.5e-11 73.6 80 53.8
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 5.6e-11 71.6 81 50.6
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 7.3e-11 71.2 71 60.6
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 9.5e-11 70.9 76 52.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 1.4e-09 67.0 88 46.6
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.8e-09 66.6 82 48.8
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 8.9e-09 64.3 37 75.7
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-08 63.2 65 61.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.6e-08 62.8 65 56.9
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.2e-07 59.7 50 68.0
A09p64000 Brassica napus HOM05D000101 ORTHO05D000089 8.3e-07 57.8 38 73.7
BraA09t41750Z Brassica rapa HOM05D000101 ORTHO05D000089 8.3e-07 57.8 38 73.7
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.4e-06 57.0 35 71.4
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 3.2e-06 55.8 33 75.8
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 7.0e-06 54.7 65 55.4


User provided reference genes

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