Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 3.1e-90 335.1 170 100.0
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 7.4e-84 313.9 162 98.1
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 8.0e-78 293.9 203 78.3
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-51 206.1 215 57.7
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-49 200.3 231 55.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-49 200.3 231 55.0
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-46 190.3 204 57.4
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 6.8e-45 184.5 220 53.2
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-43 180.3 269 47.2
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 8.3e-43 177.6 269 46.5
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 8.3e-43 177.6 269 46.5
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 8.3e-43 177.6 269 46.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 8.3e-43 177.6 269 46.5
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.9e-42 176.4 269 45.7
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 4.1e-42 175.3 269 46.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 7.0e-42 174.5 269 45.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.5e-41 172.2 269 44.6
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 6.0e-41 171.4 269 44.6
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 5.0e-40 168.3 269 43.9
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 5.0e-40 168.3 269 43.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.5e-39 166.8 269 43.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 4.3e-39 165.2 99 84.8
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.7e-35 153.3 269 41.6
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.2e-35 152.9 269 41.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.9e-35 152.5 269 41.6
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.7e-35 152.1 269 41.6
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.9e-35 151.8 269 41.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 8.3e-35 151.0 269 41.6
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 8.3e-35 151.0 269 39.8
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.4e-34 150.2 291 39.9
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.4e-34 149.4 247 41.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.2e-33 147.1 269 39.8
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.6e-33 146.7 285 38.9
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.6e-33 146.7 269 40.1
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.7e-33 146.0 269 39.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.5e-33 145.6 254 40.6
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 4.6e-33 145.2 269 39.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 6.0e-33 144.8 247 40.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.0e-33 144.8 269 40.5
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 6.0e-33 144.8 269 40.5
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.0e-32 144.1 269 39.8
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.3e-32 143.7 291 37.5
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 3.0e-32 142.5 269 39.4
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 3.0e-32 142.5 269 39.0
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.9e-32 142.1 269 38.7
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.9e-32 142.1 269 39.4
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 5.1e-32 141.7 269 39.4
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 5.1e-32 141.7 269 39.4
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 6.6e-32 141.4 268 38.1
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 6.6e-32 141.4 269 39.4
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.1e-31 140.6 269 39.8
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.1e-31 140.6 285 37.2
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.5e-31 140.2 269 38.7
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.9e-31 139.8 268 37.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 3.3e-31 139.0 269 39.4
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 3.3e-31 139.0 265 38.9
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.3e-31 139.0 286 37.4
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 7.3e-31 137.9 269 38.7
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.2e-30 137.1 269 39.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.6e-30 136.7 267 38.6
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.8e-30 136.0 268 36.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.8e-30 136.0 268 37.3
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.8e-30 136.0 268 37.3
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.6e-30 135.6 269 37.5
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 3.6e-30 135.6 269 37.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 6.2e-30 134.8 269 37.5
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 6.2e-30 134.8 269 37.5
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.1e-29 134.0 260 38.8
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.1e-29 134.0 265 38.1
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.1e-29 134.0 269 38.3
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.4e-29 133.7 267 37.8
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.3e-29 132.9 165 47.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.3e-29 132.9 269 36.4
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 3.1e-29 132.5 269 36.1
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.0e-29 132.1 99 66.7
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 4.0e-29 132.1 269 38.3
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.2e-28 130.6 268 36.6
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.0e-28 129.8 268 36.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 4.4e-28 128.6 268 36.9
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 4.4e-28 128.6 268 36.9
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.6e-28 127.9 268 36.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.6e-28 127.9 268 36.6
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.3e-27 127.1 98 66.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.7e-27 126.7 99 65.7
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.9e-27 125.9 268 36.2
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 2.9e-27 125.9 269 36.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.8e-27 125.6 132 55.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 6.4e-27 124.8 99 64.6
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 6.4e-27 124.8 99 64.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.4e-26 123.6 99 63.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.9e-26 123.2 99 64.6
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.4e-26 122.9 269 35.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 3.2e-26 122.5 99 63.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 5.4e-26 121.7 102 61.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.1e-26 121.3 268 34.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 9.2e-26 120.9 98 64.3
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.2e-25 120.6 269 34.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.2e-25 120.6 99 62.6
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.6e-25 120.2 98 64.3
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.7e-25 119.4 266 38.0
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.7e-25 119.4 128 51.6
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.5e-25 119.0 98 64.3
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.6e-25 118.6 98 64.3
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.0e-24 117.5 263 34.2
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.3e-24 117.1 99 61.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.3e-24 117.1 269 35.3
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.1e-23 114.0 99 59.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.9e-23 113.2 99 59.6
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 3.3e-23 112.5 298 32.2
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.3e-23 112.5 108 55.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 4.3e-23 112.1 205 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 7.3e-23 111.3 269 33.5
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 9.6e-23 110.9 92 63.0
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 3.6e-22 109.0 268 34.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 4.7e-22 108.6 98 58.2
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.1e-21 107.5 106 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.8e-21 106.7 268 32.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.8e-21 106.7 93 54.8
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.4e-21 106.3 268 31.0
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.1e-21 105.9 128 45.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.4e-20 102.4 99 55.6
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.4e-20 102.4 99 55.6
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 5.8e-20 101.7 93 57.0
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 9.9e-20 100.9 263 30.4
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 2.2e-19 99.8 99 54.5
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.4e-19 98.2 183 39.9
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.7e-16 87.8 236 31.8
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.5e-15 87.0 262 29.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 9.6e-15 84.3 269 31.6
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.6e-14 83.6 109 43.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 3.6e-14 82.4 262 28.6
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 8.1e-14 81.3 62 59.7
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 4.5e-12 75.5 132 37.9
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-11 73.9 117 46.2
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.4e-10 70.5 270 25.6
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 5.6e-07 58.5 98 36.7
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.8e-06 55.5 98 35.7


User provided reference genes

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