Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 1.9e-130 469.5 298 100.0
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 1.9e-130 469.5 298 100.0
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 1.9e-130 469.5 298 100.0
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 7.7e-76 288.1 270 68.9
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 1.4e-61 240.7 296 49.7
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 1.4e-61 240.7 296 49.7
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 3.2e-58 229.6 295 48.8
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 3.2e-58 229.6 295 48.8
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 1.4e-56 224.2 268 71.6
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 1.0e-51 208.0 277 48.4
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 2.7e-44 183.3 104 94.2
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 1.7e-35 154.1 294 37.1
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 2.1e-33 147.1 299 35.1
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-32 144.4 299 34.8
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.4e-32 144.4 299 34.8
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 8.9e-32 141.7 300 34.0
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 1.6e-28 131.0 296 33.4
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 1.5e-26 124.4 253 37.2
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 2.1e-25 120.6 297 30.3
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 2.9e-22 110.2 131 45.0
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.1e-13 81.6 288 27.4
BcaB01g06323 Brassica carinata HOM05D003303 ORTHO05D000019 2.1e-12 77.4 69 60.9
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 3.9e-11 73.2 136 33.8
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 3.1e-08 63.5 137 32.8
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 5.2e-08 62.8 132 31.8
Carub.0001s1426 Capsella rubella HOM05D003358 ORTHO05D043389 1.5e-07 61.2 287 25.8
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 2.0e-07 60.8 298 25.8
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 4.4e-07 59.7 137 31.4
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 4.4e-07 59.7 137 30.7
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 5.8e-07 59.3 137 31.4
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 5.8e-07 59.3 137 31.4
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 7.6e-07 58.9 299 26.4
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 7.6e-07 58.9 137 30.7
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 9.9e-07 58.5 137 32.8
CARHR014990 Cardamine hirsuta HOM05D011503 ORTHO05D013743 9.9e-07 58.5 71 49.3
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 9.9e-07 58.5 137 30.7
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.3e-06 58.2 137 29.9
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.3e-06 58.2 137 29.2
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.7e-06 57.8 137 29.2
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.7e-06 57.8 137 29.2
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.7e-06 57.8 137 29.2
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.2e-06 57.4 137 29.9
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 2.2e-06 57.4 137 29.9
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 2.9e-06 57.0 136 30.9
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 2.9e-06 57.0 137 29.9
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 3.8e-06 56.6 137 29.2
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 4.9e-06 56.2 137 29.9
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 4.9e-06 56.2 137 29.9
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 4.9e-06 56.2 137 27.7
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 6.4e-06 55.8 293 24.9
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 8.4e-06 55.5 137 28.5
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 8.4e-06 55.5 137 29.2


User provided reference genes

Program Settings