Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41540 Brassica carinata HOM05D007672 ORTHO05D009617 8.3e-53 210.3 122 100.0
C08p45430 Brassica napus HOM05D007672 ORTHO05D009617 7.0e-52 207.2 121 99.2
BolC8t52097H Brassica oleracea HOM05D007672 ORTHO05D009617 3.5e-51 204.9 121 98.3
A09p61810 Brassica napus HOM05D007672 ORTHO05D009617 4.4e-46 188.0 121 91.7
BraA09t41549Z Brassica rapa HOM05D007672 ORTHO05D009617 4.4e-46 188.0 121 91.7
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 1.8e-39 166.0 116 72.4
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 1.2e-38 163.3 125 71.2
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 2.6e-38 162.2 114 74.6
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 1.3e-37 159.8 126 69.0
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 1.3e-37 159.8 114 73.7
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 2.2e-37 159.1 112 74.1
BraA06t24260Z Brassica rapa HOM05D007672 ORTHO05D009617 3.7e-37 158.3 125 68.8
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 3.7e-37 158.3 121 68.6
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 2.1e-35 152.5 115 67.8
Thhalv10009881m.g Eutrema salsugineum HOM05D007672 ORTHO05D009617 1.5e-33 146.4 109 71.6
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 1.1e-25 120.2 115 57.4
AT1G14760 Arabidopsis thaliana HOM05D007672 ORTHO05D009617 2.4e-23 112.5 65 86.2
THA.LOC104823640 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 5.8e-22 107.8 117 56.4
THA.LOC104805091 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 1.0e-18 97.1 111 53.2
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 1.3e-13 80.1 109 45.0
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.9e-13 79.0 118 39.8
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 3.8e-13 78.6 118 39.8
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 4.9e-13 78.2 117 41.0
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 3.2e-12 75.5 125 36.8
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 4.2e-12 75.1 113 37.2
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 1.6e-11 73.2 110 40.0
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 3.5e-11 72.0 122 36.1
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 4.6e-11 71.6 117 36.8
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 1.3e-10 70.1 117 37.6
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 1.8e-10 69.7 109 39.4
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 3.9e-10 68.6 109 40.4
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 3.9e-10 68.6 122 32.8
Dinv06126 Davidia involucrata HOM05D008473 ORTHO05D009617 2.5e-09 65.9 94 39.4
Nitab4.5_0004855g0020 Nicotiana tabacum HOM05D007672 ORTHO05D009617 9.6e-09 63.9 122 32.0
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 9.6e-09 63.9 110 31.8
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 1.3e-08 63.5 108 35.2
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 1.3e-08 63.5 115 36.5
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 1.6e-08 63.2 114 36.8
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 2.1e-08 62.8 102 38.2
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 2.8e-08 62.4 106 37.7
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 3.7e-08 62.0 122 32.8
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 4.8e-08 61.6 122 33.6
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 4.8e-08 61.6 108 36.1
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 4.8e-08 61.6 108 33.3
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 6.2e-08 61.2 110 36.4
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 6.2e-08 61.2 110 34.5
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 8.1e-08 60.8 105 37.1
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 8.1e-08 60.8 103 37.9
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 8.1e-08 60.8 105 37.1
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 8.1e-08 60.8 111 32.4
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 8.1e-08 60.8 131 31.3
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 1.1e-07 60.5 109 39.4
Solyc06g072480.1 Solanum lycopersicum HOM05D007672 ORTHO05D009617 1.1e-07 60.5 118 39.8
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 1.4e-07 60.1 122 32.8
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 1.4e-07 60.1 114 33.3
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.4e-07 60.1 112 37.5
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 1.8e-07 59.7 107 38.3
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 1.8e-07 59.7 107 36.4
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.4e-07 59.3 103 35.0
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 2.4e-07 59.3 110 35.5
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 2.4e-07 59.3 112 31.2
CAN.G65.98 Capsicum annuum HOM05D007672 ORTHO05D009617 3.1e-07 58.9 124 40.3
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 4.0e-07 58.5 109 34.9
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 4.0e-07 58.5 109 34.9
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 4.0e-07 58.5 113 34.5
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 4.0e-07 58.5 106 34.9
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 4.0e-07 58.5 112 33.0
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 5.3e-07 58.2 107 35.5
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 6.9e-07 57.8 114 33.3
FAN17G1984 Fragaria x ananassa HOM05D007672 ORTHO05D009617 6.9e-07 57.8 102 37.3
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 1.2e-06 57.0 110 30.0
VMungo0464G2034 Vigna mungo HOM05D000162 ORTHO05D009617 1.2e-06 57.0 119 35.3
CDE05G0014 Ceratophyllum demersum HOM05D007672 ORTHO05D009617 1.5e-06 56.6 119 32.8
TWI15G1176 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 2.0e-06 56.2 139 30.2
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 7.6e-06 54.3 108 32.4
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 1.0e-05 53.9 106 34.0
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 1.0e-05 53.9 119 29.4
Nn4g24448 Nelumbo nucifera HOM05D007672 ORTHO05D009617 1.0e-05 53.9 63 47.6
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.0e-05 53.9 115 31.3


User provided reference genes

Program Settings