Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 2.6e-111 405.6 239 100.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 3.8e-94 348.6 216 97.7
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.0e-79 299.7 235 73.6
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 5.9e-79 298.1 232 73.7
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-78 296.6 232 73.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 2.8e-76 289.3 233 76.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.5e-74 283.5 233 76.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.0e-74 283.1 211 82.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-74 282.7 210 77.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 2.6e-74 282.7 210 77.6
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 5.8e-74 281.6 232 72.4
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.3e-73 280.4 233 76.4
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.1e-72 275.4 231 76.2
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 9.2e-72 274.2 235 69.4
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 2.0e-71 273.1 235 74.0
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.7e-70 270.0 247 66.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.3e-70 269.6 234 74.8
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-70 268.9 177 90.4
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 9.5e-69 264.2 232 71.1
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.8e-60 236.1 215 70.2
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-59 233.8 155 82.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-55 219.9 178 72.5
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 6.0e-55 218.4 137 85.4
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.9e-54 215.7 233 54.9
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 4.0e-51 205.7 242 53.3
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 8.9e-51 204.5 240 52.9
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 9.9e-50 201.1 175 63.4
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-49 200.3 111 92.8
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.7e-49 200.3 238 52.9
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-48 197.2 236 49.6
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.2e-48 196.1 240 51.7
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 4.1e-48 195.7 240 51.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.6e-47 193.7 242 52.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.6e-47 193.7 228 50.9
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.6e-47 193.7 236 51.3
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.6e-47 193.7 241 50.2
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.1e-47 193.4 238 50.4
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 2.7e-47 193.0 172 59.3
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.5e-47 192.6 243 49.0
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.3e-46 190.7 171 60.2
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.7e-46 190.3 229 53.3
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.3e-46 189.9 172 59.9
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 3.0e-46 189.5 219 51.1
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.5e-45 187.2 233 49.8
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-45 187.2 190 54.7
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.5e-45 187.2 240 50.8
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 5.6e-45 185.3 239 50.6
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.6e-45 185.3 232 50.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.2e-44 184.1 212 53.3
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.2e-44 184.1 232 50.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.2e-44 184.1 233 50.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.8e-44 183.0 223 50.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 3.6e-44 182.6 241 48.1
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 3.6e-44 182.6 243 47.3
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 3.6e-44 182.6 171 59.6
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 3.6e-44 182.6 172 57.0
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.1e-43 181.0 230 48.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.4e-43 180.6 232 50.4
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.4e-43 180.6 255 47.8
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.4e-43 180.6 172 57.0
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.4e-43 180.6 237 48.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 2.4e-43 179.9 172 58.7
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.4e-43 179.9 174 56.3
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.2e-43 178.7 190 54.2
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 6.9e-43 178.3 171 59.1
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 6.9e-43 178.3 227 47.6
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 9.0e-43 177.9 237 46.4
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.2e-42 177.6 240 45.4
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.2e-42 177.6 232 47.4
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.5e-42 177.2 171 55.0
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.4e-42 176.0 232 47.4
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 3.4e-42 176.0 242 53.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.4e-42 176.0 243 47.3
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 5.8e-42 175.3 178 53.9
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 7.6e-42 174.9 225 51.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 7.6e-42 174.9 228 47.8
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 9.9e-42 174.5 232 45.3
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.2e-41 173.3 165 55.2
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.9e-41 172.9 240 47.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 3.8e-41 172.6 171 56.1
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 8.4e-41 171.4 243 47.3
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-40 170.6 162 55.6
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-40 170.6 162 55.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-40 170.6 162 55.6
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.2e-40 169.1 232 48.7
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 5.4e-40 168.7 174 54.6
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 7.1e-40 168.3 184 53.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 9.3e-40 167.9 171 52.6
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-39 167.5 240 47.9
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.7e-39 166.4 183 51.9
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.7e-39 166.4 243 44.4
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 4.6e-39 165.6 258 44.2
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 7.8e-39 164.9 171 54.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 2.3e-38 163.3 228 46.5
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 3.9e-38 162.5 224 44.2
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.1e-37 161.0 153 56.9
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.5e-37 160.6 171 52.6
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.5e-37 160.6 171 52.6
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.5e-37 159.8 249 43.4
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.3e-37 159.5 153 55.6
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 7.3e-37 158.3 188 50.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.1e-36 156.8 218 47.2
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.8e-36 156.4 155 56.1
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.6e-36 156.0 214 46.7
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 8.1e-36 154.8 167 50.3
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.1e-35 154.5 145 58.6
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 3.1e-35 152.9 233 44.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.2e-34 151.0 115 64.3
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.5e-34 150.6 197 46.2
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 3.4e-34 149.4 141 57.4
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 7.6e-34 148.3 142 57.7
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.9e-33 146.4 170 47.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.4e-32 144.1 186 47.8
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.1e-32 141.7 227 41.0
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 9.3e-32 141.4 160 53.8
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.1e-31 140.2 153 50.3
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.0e-30 137.9 157 49.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.3e-30 137.5 157 52.2
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.8e-30 137.1 142 52.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 2.3e-30 136.7 115 61.7
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 8.7e-30 134.8 226 38.9
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.1e-29 134.4 200 42.5
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.1e-29 134.4 154 49.4
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.9e-29 133.7 106 77.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.4e-29 131.7 165 44.2
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 7.4e-29 131.7 229 38.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-26 124.4 240 37.9
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 5.5e-24 115.5 161 44.7
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 6.0e-23 112.1 141 46.8
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.9e-21 107.1 216 43.1
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 7.4e-21 105.1 115 53.9
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 4.8e-20 102.4 133 48.1
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 5.3e-19 99.0 113 50.4
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.3e-17 94.4 105 48.6
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.8e-14 84.0 88 52.3
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 8.7e-14 81.6 66 59.1
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 3.3e-13 79.7 173 32.9
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 7.4e-13 78.6 165 30.9
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.6e-12 77.4 139 41.7
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 7.7e-10 68.6 146 31.5
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.6e-07 60.8 60 50.0
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 1.0e-06 58.2 101 36.6
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 3.0e-06 56.6 132 31.8
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 8.8e-06 55.1 120 30.8


User provided reference genes

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