Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41387 Brassica carinata HOM05D009551 ORTHO05D008048 4.7e-69 264.6 153 100.0
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 2.2e-55 219.2 153 75.2
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 1.9e-54 216.1 153 75.8
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 8.0e-53 210.7 153 73.9
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 5.2e-52 208.0 153 73.2
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 6.1e-45 184.5 158 65.2
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 8.0e-45 184.1 155 66.5
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 8.0e-45 184.1 155 66.5
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 2.6e-43 179.1 156 65.4
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 2.6e-43 179.1 156 65.4
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 2.6e-43 179.1 156 65.4
BraA09t41442Z Brassica rapa HOM05D009551 ORTHO05D008048 2.8e-42 175.6 114 79.8
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 1.4e-41 173.3 156 62.2
Sp1g14990 Schrenkiella parvula HOM05D009551 ORTHO05D008048 2.7e-40 169.1 155 63.9
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 9.5e-38 160.6 125 65.6
AL1G29020 Arabidopsis lyrata HOM05D009551 ORTHO05D008048 1.8e-36 156.4 125 64.8
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 7.8e-32 141.0 127 59.1
CARHR017320 Cardamine hirsuta HOM05D009551 ORTHO05D008048 5.0e-31 138.3 157 55.4
Aa31LG7G1280 Aethionema arabicum HOM05D002763 ORTHO05D002972 3.7e-26 122.1 100 63.0
THA.LOC104808101 Tarenaya hassleriana HOM05D009551 ORTHO05D008048 2.1e-21 106.3 126 50.0
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 3.1e-12 75.9 121 38.8
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 6.4e-10 68.2 119 38.7
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 2.4e-09 66.2 125 36.8
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.6e-08 63.5 120 35.0
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 1.6e-08 63.5 73 46.6
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 2.1e-08 63.2 113 33.6
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 2.7e-08 62.8 108 38.0
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 3.5e-08 62.4 120 34.2
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 3.5e-08 62.4 120 34.2
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 3.5e-08 62.4 120 34.2
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.0e-07 60.8 120 33.3
Nitab4.5_0004977g0060 Nicotiana tabacum HOM05D017188 ORTHO05D008048 1.0e-07 60.8 118 34.7
Glyma.08G224100 Glycine max HOM05D014935 ORTHO05D008048 1.3e-07 60.5 117 34.2
Nitab4.5_0003757g0050 Nicotiana tabacum HOM05D006700 ORTHO05D008196 1.3e-07 60.5 72 38.9
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 1.7e-07 60.1 116 37.1
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 3.0e-07 59.3 123 30.1
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 3.0e-07 59.3 75 38.7
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 3.9e-07 58.9 131 31.3
TPR.G38723 Trifolium pratense HOM05D014935 ORTHO05D008048 5.1e-07 58.5 67 47.8
arahy.Tifrunner.gnm1.ann1.18RYE7 Arachis hypogaea HOM05D008407 ORTHO05D008048 6.6e-07 58.2 123 30.1
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 6.6e-07 58.2 118 33.9
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 8.6e-07 57.8 121 32.2
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 8.6e-07 57.8 58 51.7
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 1.5e-06 57.0 120 32.5
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 1.5e-06 57.0 74 39.2
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 1.5e-06 57.0 74 39.2
PGSC0003DMG400026512 Solanum tuberosum HOM05D009551 ORTHO05D008048 1.5e-06 57.0 74 39.2
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 1.9e-06 56.6 80 41.2
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 2.5e-06 56.2 122 32.8
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 3.3e-06 55.8 121 31.4
Medtr4g005500 Medicago truncatula HOM05D014935 ORTHO05D008048 4.3e-06 55.5 136 27.9
arahy.Tifrunner.gnm1.ann1.FI1JAT Arachis hypogaea HOM05D008407 ORTHO05D008048 5.6e-06 55.1 123 28.5
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 5.6e-06 55.1 102 37.3
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 7.3e-06 54.7 113 35.4
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 9.6e-06 54.3 75 37.3


User provided reference genes

Program Settings