Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 3.4e-50 201.4 106 100.0
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 5.2e-35 151.0 114 75.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-34 149.1 117 73.5
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 2.0e-34 149.1 117 73.5
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 7.5e-34 147.1 117 72.6
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.7e-30 136.0 113 69.9
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.4e-27 126.3 111 64.9
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.8e-27 125.9 113 63.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 4.4e-26 121.3 113 61.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 5.8e-26 120.9 113 60.2
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 9.8e-26 120.2 113 61.1
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 9.8e-26 120.2 113 60.2
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.3e-25 119.8 113 62.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.2e-25 119.0 113 60.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 3.7e-25 118.2 112 61.6
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.4e-24 116.3 110 65.5
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.9e-24 115.9 112 60.7
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 2.4e-24 115.5 112 61.6
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 2.4e-24 115.5 112 61.6
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.4e-24 115.5 116 61.2
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 3.2e-24 115.2 112 60.7
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 9.2e-24 113.6 113 58.4
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.7e-23 112.1 114 62.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.7e-22 109.4 110 62.7
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 3.3e-21 105.1 114 53.5
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 5.6e-21 104.4 113 52.2
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 5.6e-21 104.4 116 51.7
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.6e-21 104.4 116 51.7
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.2e-20 103.2 116 52.6
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.6e-20 102.8 113 54.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.6e-20 102.8 113 54.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 2.1e-20 102.4 111 53.2
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.6e-20 101.7 116 52.6
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.1e-19 100.1 101 55.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.8e-19 99.4 101 55.4
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.8e-19 99.4 101 55.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.1e-19 98.6 106 51.9
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.0e-19 98.2 113 48.7
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 4.0e-19 98.2 112 50.0
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 4.0e-19 98.2 109 50.5
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 5.2e-19 97.8 116 50.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 5.2e-19 97.8 106 51.9
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 5.2e-19 97.8 102 56.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 5.2e-19 97.8 100 54.0
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 8.9e-19 97.1 96 56.2
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 8.9e-19 97.1 116 52.6
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 8.9e-19 97.1 116 47.4
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 8.9e-19 97.1 96 56.2
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.2e-18 96.7 114 50.9
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.2e-18 96.7 114 50.9
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.2e-18 96.7 114 50.9
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.5e-18 96.3 98 54.1
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.0e-18 95.9 96 54.2
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.0e-18 95.9 115 47.0
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.0e-18 95.9 115 46.1
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 2.6e-18 95.5 97 53.6
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.6e-18 95.5 96 54.2
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.6e-18 95.5 116 49.1
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 3.4e-18 95.1 101 51.5
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 3.4e-18 95.1 116 51.7
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.4e-18 95.1 96 54.2
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 3.4e-18 95.1 111 47.7
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.4e-18 94.7 116 54.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 5.8e-18 94.4 86 67.4
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 5.8e-18 94.4 114 47.4
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 5.8e-18 94.4 112 49.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 9.8e-18 93.6 103 53.4
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 9.8e-18 93.6 103 52.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 9.8e-18 93.6 98 55.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 9.8e-18 93.6 95 54.7
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.3e-17 93.2 98 54.1
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.7e-17 92.8 89 56.2
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.2e-17 92.4 86 66.3
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.2e-17 92.4 145 41.4
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.2e-17 92.4 112 47.3
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.9e-17 92.0 112 49.1
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.9e-17 92.0 96 54.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 4.9e-17 91.3 96 52.1
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 4.9e-17 91.3 98 53.1
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 6.4e-17 90.9 96 53.1
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 8.3e-17 90.5 112 49.1
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.4e-16 89.7 100 51.0
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.4e-16 89.7 95 52.6
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.4e-16 89.7 95 52.6
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.4e-16 89.7 95 52.6
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.4e-16 89.0 90 53.3
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.4e-16 89.0 96 50.0
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 3.2e-16 88.6 96 50.0
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 3.2e-16 88.6 116 46.6
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 4.1e-16 88.2 98 51.0
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 5.4e-16 87.8 95 52.6
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.6e-15 86.3 103 51.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 2.7e-15 85.5 106 48.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.7e-15 85.5 96 50.0
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 2.7e-15 85.5 136 39.0
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.5e-15 85.1 111 46.8
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.5e-15 85.1 88 53.4
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 3.5e-15 85.1 95 52.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 3.5e-15 85.1 95 52.6
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 4.6e-15 84.7 95 51.6
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 6.0e-15 84.3 112 42.9
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.0e-15 84.3 109 43.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.7e-14 82.8 89 53.9
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.0e-14 82.0 96 50.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.9e-14 81.6 87 55.2
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.1e-14 81.3 111 45.0
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 5.1e-14 81.3 96 49.0
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 8.6e-14 80.5 90 52.2
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.9e-13 79.3 102 48.0
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 9.5e-13 77.0 82 54.9
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.1e-11 72.0 83 51.8
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 6.8e-11 70.9 83 50.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 8.9e-11 70.5 74 54.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 2.6e-10 68.9 134 37.3
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.3e-09 66.6 45 77.8
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 8.4e-09 63.9 98 42.9
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.2e-07 60.1 37 78.4
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.6e-07 59.7 45 66.7
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.6e-07 59.7 103 35.0
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 2.1e-07 59.3 45 66.7
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.1e-07 59.3 73 45.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.8e-07 57.4 45 62.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 7.8e-07 57.4 34 79.4
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 3.0e-06 55.5 37 70.3
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.1e-06 54.7 72 44.4
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.1e-06 54.7 82 41.5


User provided reference genes

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