Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41265 Brassica carinata HOM05D002382 ORTHO05D019928 5.2e-21 103.6 58 100.0
C04p58210 Brassica napus HOM05D002382 ORTHO05D000411 2.0e-20 101.7 57 100.0
BolC1t04290H Brassica oleracea HOM05D002382 ORTHO05D019928 5.8e-20 100.1 56 100.0
C08p42690 Brassica napus HOM05D002382 ORTHO05D019928 2.4e-18 94.7 54 94.4
A05p24030 Brassica napus HOM05D002382 ORTHO05D019928 7.0e-18 93.2 54 92.6
A07p05980 Brassica napus HOM05D002382 ORTHO05D019928 7.0e-18 93.2 54 92.6
BraA05t21282Z Brassica rapa HOM05D002382 ORTHO05D019928 7.0e-18 93.2 54 92.6
BolC4t27349H Brassica oleracea HOM05D002382 ORTHO05D019928 6.0e-17 90.1 54 90.7
BcaB03g12607 Brassica carinata HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
BcaC01g01170 Brassica carinata HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
BcaNung00475 Brassica carinata HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
A03p58940 Brassica napus HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
A08p19680 Brassica napus HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
BolC3t21240H Brassica oleracea HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
BraA03t14954Z Brassica rapa HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
BraA08t33926Z Brassica rapa HOM05D002382 ORTHO05D002622 6.4e-11 70.1 54 77.8
C03p89300 Brassica napus HOM05D002382 ORTHO05D002622 1.1e-10 69.3 53 79.2
A01p08620 Brassica napus HOM05D002382 ORTHO05D002622 7.1e-10 66.6 54 74.1
C01p10090 Brassica napus HOM05D002382 ORTHO05D002622 7.1e-10 66.6 54 74.1
BolC1t00967H Brassica oleracea HOM05D002382 ORTHO05D002622 7.1e-10 66.6 54 74.1
BolC8t51809H Brassica oleracea HOM05D002382 ORTHO05D002622 9.2e-10 66.2 54 70.4
Sp7g27290 Schrenkiella parvula HOM05D002382 ORTHO05D002622 9.2e-10 66.2 54 74.1
BcaB03g16754 Brassica carinata HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BcaB08g34878 Brassica carinata HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BcaC06g36612 Brassica carinata HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
A09p59190 Brassica napus HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
C07p02170 Brassica napus HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
C09p14830 Brassica napus HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BolC7t40626H Brassica oleracea HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BolC9t54383H Brassica oleracea HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BraA09t36896Z Brassica rapa HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
BraA09t41303Z Brassica rapa HOM05D002382 ORTHO05D002622 1.6e-09 65.5 54 70.4
AL7G22990 Arabidopsis lyrata HOM05D002382 ORTHO05D002622 2.7e-09 64.7 54 70.4
BcaC04g22833 Brassica carinata HOM05D002382 ORTHO05D002622 2.7e-09 64.7 52 73.1
BraA07t27902Z Brassica rapa HOM05D002382 ORTHO05D002622 3.5e-09 64.3 54 68.5
AL3G48510 Arabidopsis lyrata HOM05D002382 ORTHO05D002622 4.6e-09 63.9 54 68.5
AT2G19730 Arabidopsis thaliana HOM05D002382 ORTHO05D002622 4.6e-09 63.9 54 68.5
A07p01010 Brassica napus HOM05D002382 ORTHO05D002622 4.6e-09 63.9 53 69.8
Carub.0003s3401 Capsella rubella HOM05D002382 ORTHO05D002622 4.6e-09 63.9 54 68.5
BcaB01g02503 Brassica carinata HOM05D002382 ORTHO05D002622 6.0e-09 63.5 56 69.6
Thhalv10026507m.g Eutrema salsugineum HOM05D002382 ORTHO05D002622 6.0e-09 63.5 54 70.4
BcaC07g41242 Brassica carinata HOM05D002382 ORTHO05D002622 7.8e-09 63.2 54 68.5
C08p42480 Brassica napus HOM05D002382 ORTHO05D002622 7.8e-09 63.2 54 68.5
Thhalv10002093m.g Eutrema salsugineum HOM05D002382 ORTHO05D002622 7.8e-09 63.2 54 68.5
Sp3g33060 Schrenkiella parvula HOM05D002382 ORTHO05D002622 7.8e-09 63.2 54 68.5
CARHR110180 Cardamine hirsuta HOM05D002382 ORTHO05D002622 3.0e-08 61.2 54 66.7
Aa31LG2G21020 Aethionema arabicum HOM05D002382 ORTHO05D002622 3.9e-08 60.8 54 68.5
Aa31LG8G16700 Aethionema arabicum HOM05D002382 ORTHO05D002622 6.6e-08 60.1 54 64.8
THA.LOC104803990 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 1.1e-07 59.3 52 71.2
Carub.0007s1113 Capsella rubella HOM05D002382 ORTHO05D002622 1.9e-07 58.5 54 64.8
AT4G29410 Arabidopsis thaliana HOM05D002382 ORTHO05D002622 4.3e-07 57.4 54 63.0
THA.LOC104814597 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 5.6e-07 57.0 52 69.2
TWI32G1202 Tripterygium wilfordii HOM05D002382 ORTHO05D002622 1.6e-06 55.5 52 67.3
BcaB07g32696 Brassica carinata HOM05D002382 ORTHO05D002622 6.2e-06 53.5 37 81.1


User provided reference genes

Program Settings