Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-310 1068.1 521 100.0
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-308 1062.4 521 99.4
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-308 1062.4 521 99.4
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.6e-307 1058.5 521 98.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 8.1e-307 1056.2 521 98.5
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.5e-305 1052.0 521 97.9
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 2.9e-296 1021.1 521 94.6
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.3e-293 1012.3 521 93.3
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.9e-292 1008.4 516 93.4
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.9e-292 1008.4 516 93.4
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.3e-291 1005.7 520 92.5
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.6e-291 1005.4 517 93.2
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.8e-291 1004.6 521 92.7
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 4.8e-291 1003.8 521 92.3
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 4.8e-291 1003.8 520 92.3
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 4.8e-291 1003.8 520 92.3
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 1.2e-289 999.2 520 91.9
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-289 998.8 520 91.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 1.0e-288 996.1 520 92.3
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 6.5e-288 993.4 521 91.4
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 1.6e-286 988.8 521 90.6
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.9e-284 981.9 521 90.0
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.8e-274 948.7 521 86.4
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 6.7e-269 930.2 521 84.5
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.0e-261 904.8 521 81.6
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.7e-256 889.0 521 80.6
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 6.5e-256 887.1 521 79.5
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.5e-255 885.2 521 79.8
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 3.2e-255 884.8 521 80.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.1e-254 882.1 518 80.3
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.7e-254 881.7 517 79.7
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 8.0e-254 880.2 513 80.3
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.8e-253 879.0 521 79.1
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.8e-253 879.0 519 79.4
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.2e-252 876.3 521 78.9
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 2.6e-252 875.2 517 79.7
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.3e-251 872.8 521 77.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.8e-251 870.9 529 78.1
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.3e-251 870.5 529 78.3
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.8e-250 869.0 521 78.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.8e-250 869.0 529 78.1
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 2.4e-250 868.6 521 78.3
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 4.1e-250 867.8 545 75.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.1e-250 867.8 517 79.5
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.3e-250 867.5 521 78.1
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 5.3e-250 867.5 520 78.7
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 7.0e-250 867.1 519 78.6
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 9.1e-250 866.7 520 78.5
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.2e-249 866.3 520 78.7
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.7e-249 865.1 521 78.9
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.5e-249 864.8 529 77.7
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 3.5e-249 864.8 517 79.1
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 7.7e-249 863.6 517 78.1
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 6.5e-248 860.5 517 77.6
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 8.5e-248 860.1 522 78.2
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 77.5
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.5e-247 857.4 521 77.4
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 5.5e-247 857.4 517 78.5
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.2e-246 856.3 514 78.6
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.7e-246 855.1 521 77.5
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.4e-245 852.8 521 76.8
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.3e-245 852.0 545 74.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 4.0e-245 851.3 521 77.5
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.0e-244 849.0 521 77.0
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.6e-244 848.6 522 77.6
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.4e-244 848.2 531 75.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 3.4e-244 848.2 521 76.6
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 7.5e-244 847.0 522 76.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 7.5e-244 847.0 520 77.9
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.7e-243 845.9 521 75.8
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.7e-243 845.9 521 76.4
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.1e-242 841.6 519 76.3
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 5.4e-242 840.9 521 76.6
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.9e-241 837.4 521 74.9
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.0e-240 836.6 555 73.5
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.9e-240 835.1 522 74.9
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 5.0e-240 834.3 527 75.1
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 6.6e-240 833.9 521 76.0
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.5e-239 832.0 521 75.0
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.2e-239 831.2 521 75.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.1e-238 828.9 517 76.6
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 2.8e-238 828.6 515 74.8
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.6e-238 828.2 521 76.2
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.6e-238 828.2 522 74.1
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 6.1e-238 827.4 521 75.2
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 1.0e-237 826.6 517 75.0
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.3e-237 825.5 521 75.0
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.5e-236 822.8 521 74.7
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.6e-236 822.0 519 75.0
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 3.4e-236 821.6 523 75.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 3.4e-236 821.6 520 74.0
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.4e-236 821.2 518 75.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 5.7e-236 820.8 521 74.5
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 7.5e-236 820.5 521 74.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 3.7e-235 818.1 523 75.1
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.1e-234 816.6 493 77.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.8e-234 815.8 517 74.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.4e-234 814.3 521 74.7
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 7.0e-234 813.9 467 82.0
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.5e-233 811.2 521 73.7
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.8e-232 808.1 521 74.9
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-231 806.6 525 73.3
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.5e-231 806.2 520 72.7
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 7.3e-231 803.9 521 74.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 2.1e-230 802.4 521 73.7
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.0e-229 800.0 522 72.2
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.3e-229 798.9 521 72.6
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-229 798.9 520 71.5
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.6e-228 795.4 509 74.7
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 3.7e-227 791.6 465 80.2
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 8.3e-227 790.4 531 71.4
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.4e-226 789.6 478 77.2
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 2.4e-226 788.9 505 75.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 9.2e-226 786.9 520 71.3
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 9.2e-226 786.9 467 79.2
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-225 786.2 505 74.7
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.5e-225 785.0 467 80.1
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.3e-224 783.1 491 74.9
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 6.6e-224 780.8 516 72.5
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 2.5e-223 778.9 550 69.1
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 9.5e-223 776.9 519 72.3
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.2e-222 776.5 517 70.8
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.2e-222 774.2 471 77.3
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 1.1e-221 773.5 470 77.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.8e-221 772.7 554 68.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-220 770.0 521 71.4
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 2.2e-219 765.8 520 70.4
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.2e-217 760.0 562 68.3
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.1e-215 753.4 519 69.7
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.9e-215 752.7 521 69.3
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.1e-214 749.2 521 68.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.1e-213 745.3 521 68.9
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.0e-213 745.0 574 64.3
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.5e-212 743.0 521 68.7
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.7e-211 738.4 521 69.1
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 4.9e-211 738.0 521 68.7
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 2.4e-210 735.7 521 68.9
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 2.0e-204 716.1 541 64.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.5e-196 689.9 520 65.4
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.6e-193 679.9 521 63.7
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.1e-189 667.2 498 69.1
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 2.9e-187 659.1 383 80.2
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.8e-184 649.8 381 79.5
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 8.1e-182 641.0 383 78.1
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 4.5e-180 635.2 481 64.0
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.6e-177 626.7 481 64.9
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 4.6e-177 625.2 562 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.4e-173 613.6 487 59.3
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 3.3e-167 592.4 447 62.4
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 4.1e-165 585.5 293 95.6
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 4.5e-156 555.4 473 56.9
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.2e-153 547.4 513 54.2
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.0e-139 501.1 353 68.6
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.7e-132 476.5 286 77.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.4e-127 459.5 292 74.3
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 3.3e-122 443.0 289 73.4
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.2e-122 442.6 267 76.0
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 8.0e-121 438.3 289 74.0
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.7e-108 396.7 250 73.2
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.2e-97 361.3 245 72.2
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-79 301.2 204 70.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.8e-56 224.6 469 32.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.2e-55 221.9 132 75.8
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.6e-55 220.7 467 31.5
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.4e-39 167.2 152 51.3
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.6e-36 158.3 205 46.3
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 3.3e-34 150.6 109 65.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.0e-27 127.5 86 70.9
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 4.2e-21 107.1 58 81.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-20 104.0 141 46.8
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 6.8e-19 99.8 60 75.0
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 4.4e-18 97.1 156 35.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.2e-13 80.9 165 37.0
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.9e-07 60.1 66 48.5
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.7e-07 59.7 37 75.7
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 7.7e-07 59.7 55 58.2


User provided reference genes

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