Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41230 Brassica carinata HOM05D023175 ORTHO05D017401 1.5e-120 436.0 197 100.0
C08p42350 Brassica napus HOM05D023175 ORTHO05D017401 1.3e-92 343.2 157 100.0
A09p59070 Brassica napus HOM05D023175 ORTHO05D017401 1.0e-60 237.3 113 93.8
Carub.0003s3425 Capsella rubella HOM05D000125 ORTHO05D017401 1.3e-50 203.8 171 54.4
BolC8t51795H Brassica oleracea HOM05D023175 ORTHO05D017401 1.4e-49 200.3 89 96.6
CARHR110460 Cardamine hirsuta HOM05D000125 ORTHO05D017401 1.8e-28 130.2 90 64.4
Thhalv10002351m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 5.9e-24 115.2 164 38.4
AT3G59120 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 5.5e-22 108.6 185 35.7
Thhalv10005834m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 5.5e-22 108.6 166 39.2
Carub.0001s4422 Capsella rubella HOM05D000125 ORTHO05D000120 2.7e-21 106.3 173 32.4
BcaB04g18586 Brassica carinata HOM05D000125 ORTHO05D000120 4.7e-21 105.5 156 35.9
Thhalv10023009m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.0e-20 104.4 163 34.4
AT3G11402 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.8e-20 103.6 173 32.9
Carub.0006s1615 Capsella rubella HOM05D000125 ORTHO05D000120 3.0e-20 102.8 167 34.1
CARHR110450 Cardamine hirsuta HOM05D023175 ORTHO05D017401 1.3e-18 97.4 73 57.5
Carub.0003s3160 Capsella rubella HOM05D000125 ORTHO05D000120 2.8e-18 96.3 166 36.1
AT5G17960 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 8.2e-18 94.7 163 31.9
Thhalv10000829m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.4e-17 93.2 158 30.4
AT2G17600 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 9.1e-17 91.3 168 31.0
Carub.0003s3169 Capsella rubella HOM05D000125 ORTHO05D000120 9.1e-17 91.3 157 32.5
CARHR045050 Cardamine hirsuta HOM05D000125 ORTHO05D000120 9.1e-17 91.3 162 33.3
Thhalv10000813m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 9.1e-17 91.3 157 30.6
AT2G17590 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.6e-16 89.7 157 31.8
Carub.0003s3168 Capsella rubella HOM05D000125 ORTHO05D000120 2.6e-16 89.7 157 33.1
Thhalv10012036m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.6e-16 89.7 157 31.2
CARHR107780 Cardamine hirsuta HOM05D000125 ORTHO05D000120 4.5e-16 89.0 162 31.5
CARHR107790 Cardamine hirsuta HOM05D000125 ORTHO05D000120 5.9e-16 88.6 160 33.8
Aa31LG6G6430 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.7e-15 87.0 177 30.5
C02p47800 Brassica napus HOM05D000029 ORTHO05D021997 1.7e-15 87.0 162 30.2
Thhalv10022611m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 3.8e-15 85.9 157 33.1
A02p30280 Brassica napus HOM05D000125 ORTHO05D000120 5.0e-15 85.5 162 29.6
BraA02t08043Z Brassica rapa HOM05D000125 ORTHO05D000120 5.0e-15 85.5 162 29.6
AT1G50190 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.5e-15 85.1 151 33.8
BraA08t32125Z Brassica rapa HOM05D000125 ORTHO05D000120 1.9e-14 83.6 160 33.8
Thhalv10012084m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.5e-14 83.2 184 30.4
Carub.0008s0167 Capsella rubella HOM05D000125 ORTHO05D000120 3.2e-14 82.8 158 28.5
BcaB02g11096 Brassica carinata HOM05D000125 ORTHO05D000120 4.2e-14 82.4 157 31.2
C03p92690 Brassica napus HOM05D000125 ORTHO05D000120 4.2e-14 82.4 160 33.1
A08p00670 Brassica napus HOM05D000125 ORTHO05D000120 5.5e-14 82.0 160 33.1
Aa31LG6G8630 Aethionema arabicum HOM05D000125 ORTHO05D000120 7.2e-14 81.6 187 29.4
A05p20530 Brassica napus HOM05D000125 ORTHO05D000120 7.2e-14 81.6 144 32.6
BcaC01g01519 Brassica carinata HOM05D000125 ORTHO05D000120 9.4e-14 81.3 160 32.5
BraA05t20963Z Brassica rapa HOM05D000125 ORTHO05D000120 9.4e-14 81.3 144 31.2
CARHR045070 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.6e-13 80.5 179 30.7
C05p34470 Brassica napus HOM05D000125 ORTHO05D000120 2.1e-13 80.1 144 31.9
AT1G55380 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.6e-13 79.3 192 28.6
CARHR040270 Cardamine hirsuta HOM05D000125 ORTHO05D000120 4.7e-13 79.0 163 30.1
Aa31LG10G1190 Aethionema arabicum HOM05D000125 ORTHO05D000120 3.9e-12 75.9 183 29.0
AT1G55700 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.5e-11 73.9 185 26.5
A03p59160 Brassica napus HOM05D000125 ORTHO05D000120 1.5e-11 73.9 153 29.4
BraA03t14975Z Brassica rapa HOM05D000125 ORTHO05D000120 1.5e-11 73.9 153 29.4
Carub.0007s2885 Capsella rubella HOM05D000125 ORTHO05D000120 3.3e-11 72.8 155 29.7
Aa31LG11G5750 Aethionema arabicum HOM05D000125 ORTHO05D000120 5.7e-11 72.0 153 28.8
A03p59170 Brassica napus HOM05D000125 ORTHO05D000120 5.7e-11 72.0 153 27.5
BraA03t14976Z Brassica rapa HOM05D000125 ORTHO05D000120 5.7e-11 72.0 153 27.5
C07p57230 Brassica napus HOM05D000125 ORTHO05D000120 7.4e-11 71.6 153 28.1
BolC7t46193H Brassica oleracea HOM05D000125 ORTHO05D000120 7.4e-11 71.6 153 28.1
AL3G31410 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.3e-10 70.9 158 26.6
C01p09470 Brassica napus HOM05D000125 ORTHO05D000120 1.7e-10 70.5 153 28.8
Thhalv10000551m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.7e-10 70.5 154 27.9
BolC3t16678H Brassica oleracea HOM05D000125 ORTHO05D000120 2.2e-10 70.1 184 28.3
C01p09650 Brassica napus HOM05D000125 ORTHO05D000120 3.7e-10 69.3 170 27.1
AT4G13130 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 4.8e-10 68.9 157 26.8
BolC1t00933H Brassica oleracea HOM05D000125 ORTHO05D000120 4.8e-10 68.9 171 27.5
AT1G55440 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.3e-10 68.6 190 26.3
Carub.0001s3932 Capsella rubella HOM05D000125 ORTHO05D000120 6.3e-10 68.6 207 24.2
CARHR175500 Cardamine hirsuta HOM05D000125 ORTHO05D000120 6.3e-10 68.6 128 32.0
AT2G23100 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 8.2e-10 68.2 198 25.3
BcaNung00492 Brassica carinata HOM05D000125 ORTHO05D000120 8.2e-10 68.2 153 28.1
Thhalv10007250m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.1e-09 67.8 155 24.5
Carub.0005s0454 Capsella rubella HOM05D000125 ORTHO05D000120 1.4e-09 67.4 154 26.6
AT3G26550 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.8e-09 67.0 173 26.0
Thhalv10027008m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.8e-09 67.0 128 28.9
C01p09570 Brassica napus HOM05D000125 ORTHO05D000120 2.4e-09 66.6 154 26.6
Aa31LG11G7440 Aethionema arabicum HOM05D000125 ORTHO05D000120 3.1e-09 66.2 166 26.5
C01p09610 Brassica napus HOM05D000125 ORTHO05D000120 5.3e-09 65.5 184 26.1
C01p09640 Brassica napus HOM05D000125 ORTHO05D000120 7.0e-09 65.1 171 25.7
Aa31LG4G17750 Aethionema arabicum HOM05D000125 ORTHO05D000120 9.1e-09 64.7 161 25.5
AT3G07000 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.2e-08 64.3 141 27.7
AT1G61840 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.6e-08 63.9 155 24.5
Aa31LG4G17580 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.0e-08 63.5 161 24.2
AT3G06990 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.0e-08 63.5 150 28.0
C01p11450 Brassica napus HOM05D000125 ORTHO05D000120 2.0e-08 63.5 128 28.9
BolC1t01114H Brassica oleracea HOM05D000125 ORTHO05D000120 2.0e-08 63.5 128 28.9
BraA01t00926Z Brassica rapa HOM05D000125 ORTHO05D000120 2.0e-08 63.5 128 28.9
THA.LOC104812545 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 2.0e-08 63.5 173 25.4
BcaNung04056 Brassica carinata HOM05D000125 ORTHO05D000120 3.5e-08 62.8 160 25.6
BcaB04g18590 Brassica carinata HOM05D000125 ORTHO05D000120 4.5e-08 62.4 133 32.3
BraA09t35842Z Brassica rapa HOM05D000125 ORTHO05D000120 4.5e-08 62.4 158 26.6
Carub.0006s3058 Capsella rubella HOM05D000125 ORTHO05D000120 4.5e-08 62.4 163 27.0
Carub.0007s2565 Capsella rubella HOM05D000125 ORTHO05D000120 4.5e-08 62.4 154 26.6
Aa31LG9G1310 Aethionema arabicum HOM05D000125 ORTHO05D000120 5.9e-08 62.0 175 25.1
BcaC09g50287 Brassica carinata HOM05D000125 ORTHO05D000120 7.7e-08 61.6 128 27.3
BcaNung00235 Brassica carinata HOM05D000125 ORTHO05D000120 7.7e-08 61.6 128 25.8
Sp7g16340 Schrenkiella parvula HOM05D000125 ORTHO05D000120 7.7e-08 61.6 128 27.3
Aa31LG4G17720 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.0e-07 61.2 154 24.0
Aa31LG7G13380 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.0e-07 61.2 71 42.3
AL2G14230 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.0e-07 61.2 179 22.9
AT2G19660 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.0e-07 61.2 139 26.6
A09p01680 Brassica napus HOM05D000125 ORTHO05D000120 1.0e-07 61.2 172 24.4
Thhalv10024646m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.0e-07 61.2 154 25.3
Thhalv10029207m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.0e-07 61.2 153 26.1
AT1G58037 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.7e-07 60.5 152 26.3
AT3G27500 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.7e-07 60.5 178 26.4
BcaNung00061 Brassica carinata HOM05D000125 ORTHO05D000120 1.7e-07 60.5 128 25.8
Carub.0002s0321 Capsella rubella HOM05D000125 ORTHO05D000120 1.7e-07 60.5 154 24.0
CARHR110710 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.7e-07 60.5 162 25.3
AT1G44030 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.2e-07 60.1 181 25.4
BraA09t35822Z Brassica rapa HOM05D000125 ORTHO05D000120 2.2e-07 60.1 155 23.9
AL5G16900 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 2.9e-07 59.7 175 25.7
C09p01990 Brassica napus HOM05D000125 ORTHO05D000120 2.9e-07 59.7 161 26.1
Carub.0007s3277 Capsella rubella HOM05D000125 ORTHO05D000120 2.9e-07 59.7 159 25.2
AT4G02180 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.8e-07 59.3 160 25.6
AT5G42840 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.8e-07 59.3 161 26.7
A09p01670 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-07 59.3 161 24.2
C09p01720 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-07 59.3 161 24.8
BolC9t53106H Brassica oleracea HOM05D000125 ORTHO05D000120 3.8e-07 59.3 161 24.8
Carub.0006s2010 Capsella rubella HOM05D000125 ORTHO05D000120 3.8e-07 59.3 153 26.1
CARHR050630 Cardamine hirsuta HOM05D000125 ORTHO05D000120 3.8e-07 59.3 155 24.5
Carub.0002s0320 Capsella rubella HOM05D000125 ORTHO05D000120 5.0e-07 58.9 154 23.4
BcaC09g51610 Brassica carinata HOM05D000125 ORTHO05D000120 6.5e-07 58.5 128 27.3
CARHR081310 Cardamine hirsuta HOM05D000125 ORTHO05D000120 6.5e-07 58.5 141 27.0
Aa31LG9G2880 Aethionema arabicum HOM05D000125 ORTHO05D000120 8.5e-07 58.2 78 39.7
THA.LOC104803981 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 8.5e-07 58.2 158 27.8
Aa31LG4G17850 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.1e-06 57.8 154 24.0
A01p21620 Brassica napus HOM05D000125 ORTHO05D000120 1.1e-06 57.8 128 25.8
BolC3t16386H Brassica oleracea HOM05D000125 ORTHO05D000120 1.1e-06 57.8 155 25.2
BraA01t02067Z Brassica rapa HOM05D000125 ORTHO05D000120 1.1e-06 57.8 128 25.8
AL5G23490 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.5e-06 57.4 179 23.5
BolC9t54381H Brassica oleracea HOM05D000125 ORTHO05D000120 1.5e-06 57.4 154 26.0
Ciclev10027597m.g Citrus clementina HOM05D000125 ORTHO05D000120 1.5e-06 57.4 141 27.0
Aa31LG3G15790 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.9e-06 57.0 188 25.0
Aa31LG4G17700 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.9e-06 57.0 163 23.3
AL6G50960 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.9e-06 57.0 180 24.4
BcaC07g39845 Brassica carinata HOM05D000125 ORTHO05D000120 1.9e-06 57.0 154 26.6
AL6G51540 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 2.5e-06 56.6 191 22.5
AT5G54020 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.5e-06 56.6 112 29.5
BcaC04g24044 Brassica carinata HOM05D000125 ORTHO05D000120 2.5e-06 56.6 161 26.7
A09p12500 Brassica napus HOM05D000125 ORTHO05D000120 3.2e-06 56.2 154 26.0
BraA09t35821Z Brassica rapa HOM05D000125 ORTHO05D000120 3.2e-06 56.2 155 23.2
THA.LOC104823943 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 3.2e-06 56.2 159 23.3
Thhalv10011360m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 4.2e-06 55.8 97 34.0
THA.LOC104803120 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 4.2e-06 55.8 155 23.9
AT4G10370 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 5.5e-06 55.5 154 24.0
BcaC04g22836 Brassica carinata HOM05D000125 ORTHO05D000120 5.5e-06 55.5 154 25.3
CSS0006715 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 5.5e-06 55.5 188 26.6
CSS0016521 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 5.5e-06 55.5 188 26.6
PGR004G0302 Punica granatum HOM05D000125 ORTHO05D000120 5.5e-06 55.5 178 25.8
CSS0049072 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 7.2e-06 55.1 156 27.6
BcaC01g04364 Brassica carinata HOM05D000125 ORTHO05D000120 9.4e-06 54.7 155 25.2
C03p40880 Brassica napus HOM05D000125 ORTHO05D000120 9.4e-06 54.7 155 25.2
C09p14810 Brassica napus HOM05D000125 ORTHO05D000120 9.4e-06 54.7 154 24.7
BolC3t16366H Brassica oleracea HOM05D000125 ORTHO05D000120 9.4e-06 54.7 155 25.2
Carub.0006s3031 Capsella rubella HOM05D000125 ORTHO05D000120 9.4e-06 54.7 177 24.3


User provided reference genes

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