Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 4.1e-88 328.2 182 100.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-86 323.2 184 98.9
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.7e-82 307.8 184 86.4
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.7e-82 307.8 184 86.4
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-81 306.6 184 86.4
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-80 302.4 184 85.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 2.4e-80 302.4 184 85.3
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.0e-70 270.4 174 83.3
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 8.5e-70 267.3 190 75.8
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-67 260.0 187 81.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.2e-66 256.9 185 74.1
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 5.4e-64 248.1 190 76.8
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.2e-63 246.9 185 70.8
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 8.6e-62 240.7 163 76.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-61 239.6 167 76.0
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.6e-58 229.2 171 71.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.6e-58 229.2 171 71.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.6e-55 219.9 143 79.0
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 3.5e-47 192.2 185 66.5
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 4.3e-45 185.3 184 60.3
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 9.5e-45 184.1 165 64.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.1e-43 179.1 194 57.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.2e-43 178.3 181 58.0
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.2e-41 172.9 209 51.7
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.7e-41 172.2 178 58.4
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-41 171.8 178 58.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-40 170.6 178 57.9
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-40 168.3 179 56.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-38 164.1 179 56.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.0e-38 164.1 179 56.4
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 5.1e-38 161.8 179 55.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 6.6e-38 161.4 179 55.9
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 6.2e-36 154.8 192 52.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 5.2e-35 151.8 164 58.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 4.4e-34 148.7 163 55.8
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 7.6e-34 147.9 116 73.3
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.9e-33 145.2 176 52.8
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.4e-33 144.8 179 52.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 9.2e-32 141.0 188 51.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 9.2e-32 141.0 178 53.9
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.1e-31 139.8 161 55.3
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 4.6e-31 138.7 193 51.8
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.5e-29 132.9 203 45.8
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.3e-29 132.1 185 46.5
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 7.3e-29 131.3 209 45.5
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 9.6e-29 131.0 207 46.4
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.6e-28 130.2 211 42.2
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 8.9e-27 124.4 209 42.1
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.5e-26 123.6 208 41.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.8e-26 121.7 205 40.5
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.2e-25 119.8 207 42.5
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.4e-24 117.1 199 43.2
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 7.1e-24 114.8 211 40.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-23 112.8 179 45.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 6.6e-22 108.2 186 40.3
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-21 107.5 157 45.9
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.9e-21 106.7 203 39.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 2.5e-21 106.3 179 41.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.3e-21 105.9 191 39.8
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.3e-21 105.5 98 62.2
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-21 105.5 72 81.9
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.3e-21 105.5 207 37.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.3e-21 105.5 207 37.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.3e-21 105.5 198 39.9
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 5.6e-21 105.1 199 39.7
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.6e-20 103.6 188 39.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.1e-20 103.2 206 37.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.8e-20 102.8 211 37.4
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 2.8e-20 102.8 181 40.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.8e-20 102.8 178 40.4
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 4.8e-20 102.1 212 39.6
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 6.2e-20 101.7 169 43.8
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.1e-20 101.3 170 41.2
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 8.1e-20 101.3 174 43.7
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.1e-19 100.9 210 36.2
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-19 100.1 168 41.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 6.9e-19 98.2 179 41.3
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 9.0e-19 97.8 234 35.9
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.2e-18 97.4 144 45.1
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.5e-18 97.1 120 50.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.5e-18 97.1 184 37.5
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.0e-18 96.7 163 38.7
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.6e-18 96.3 180 41.1
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.6e-18 96.3 176 38.6
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 7.6e-18 94.7 136 48.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 9.9e-18 94.4 192 38.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 9.9e-18 94.4 181 37.6
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.3e-17 94.0 166 38.6
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.3e-17 94.0 210 39.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.7e-17 93.6 202 37.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-17 93.2 184 37.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.2e-17 93.2 200 36.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.9e-17 92.8 167 40.7
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.9e-17 92.0 213 37.1
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 4.9e-17 92.0 176 38.6
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 6.4e-17 91.7 214 36.4
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 8.4e-17 91.3 194 37.6
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.4e-17 91.3 214 36.4
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.4e-17 91.3 213 36.6
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 8.4e-17 91.3 211 36.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.4e-16 90.5 157 42.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.4e-16 90.5 224 34.4
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.4e-16 90.5 137 46.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.4e-16 89.7 161 42.2
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.2e-16 89.4 172 40.1
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.2e-16 89.4 157 40.1
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.2e-16 89.4 193 36.8
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 7.1e-16 88.2 165 37.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 9.3e-16 87.8 210 36.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.2e-15 87.4 136 44.9
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-15 87.0 182 37.4
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.5e-15 85.9 175 37.1
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 4.6e-15 85.5 166 39.2
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.9e-14 82.4 129 44.2
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.9e-14 82.4 208 33.7
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.1e-14 82.0 143 42.7
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-14 81.6 224 33.0
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 6.7e-14 81.6 178 36.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.9e-13 80.1 137 40.9
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-13 80.1 198 38.4
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.9e-13 80.1 138 44.2
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.5e-13 79.7 147 41.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.3e-13 79.3 207 33.3
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.3e-13 79.3 114 44.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 3.3e-13 79.3 181 38.1
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.3e-13 79.0 175 35.4
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.6e-12 77.0 149 40.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.1e-12 76.6 68 63.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.1e-12 76.6 176 35.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.8e-12 75.5 159 37.7
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.2e-12 75.1 204 33.8
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.1e-11 74.3 137 41.6
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.4e-11 73.9 151 40.4
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.4e-11 73.9 207 36.2
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.8e-11 73.6 198 36.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 4.0e-11 72.4 127 40.9
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 4.0e-11 72.4 137 38.7
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 5.3e-11 72.0 154 39.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 6.9e-11 71.6 207 36.7
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-10 70.9 185 34.6
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-10 69.7 216 33.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.4e-10 69.3 82 54.9
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.4e-10 69.3 173 37.6
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 9.9e-10 67.8 183 33.3
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.2e-09 66.6 165 33.9
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.9e-09 66.2 171 33.9
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 8.4e-09 64.7 185 34.6
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 8.4e-09 64.7 150 36.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-08 64.3 170 34.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.9e-08 63.5 152 34.2
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 2.4e-08 63.2 147 35.4
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 3.2e-08 62.8 187 33.2
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 4.2e-08 62.4 169 30.8
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 7.1e-08 61.6 150 35.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 9.3e-08 61.2 164 31.7
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.6e-07 60.5 163 32.5
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.6e-07 60.5 187 33.2
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 6.0e-07 58.5 122 39.3
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.7e-06 55.1 90 43.3
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 8.7e-06 54.7 92 40.2


User provided reference genes

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