Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 7.7e-77 290.4 148 100.0
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 7.7e-77 290.4 148 100.0
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 7.7e-77 290.4 148 100.0
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 2.5e-75 285.4 148 97.3
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 1.6e-74 282.7 148 95.9
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 1.3e-71 273.1 148 92.6
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 5.5e-67 257.7 148 87.8
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 1.4e-62 243.0 148 84.5
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 5.0e-60 234.6 148 82.4
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 5.5e-59 231.1 148 81.1
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 7.2e-59 230.7 148 80.4
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 7.0e-54 214.2 148 77.7
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 5.9e-53 211.1 150 75.3
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 1.2e-45 186.8 141 69.5
Sp7g26110 Schrenkiella parvula HOM05D006722 ORTHO05D007944 1.2e-18 97.1 149 45.0
BraA01t01892Z Brassica rapa HOM05D006722 ORTHO05D007944 1.4e-17 93.6 149 43.6
Thhalv10027152m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 3.1e-17 92.4 149 40.3
A01p19570 Brassica napus HOM05D006722 ORTHO05D007944 5.2e-17 91.7 149 44.3
A03p57860 Brassica napus HOM05D006722 ORTHO05D007944 8.9e-17 90.9 148 43.2
BolC7t46077H Brassica oleracea HOM05D006722 ORTHO05D007944 8.9e-17 90.9 148 43.2
BraA03t14850Z Brassica rapa HOM05D006722 ORTHO05D007944 8.9e-17 90.9 148 43.2
BcaNung01592 Brassica carinata HOM05D006722 ORTHO05D007944 1.5e-16 90.1 149 43.0
C07p56000 Brassica napus HOM05D006722 ORTHO05D007944 2.6e-16 89.4 148 43.2
BcaC06g32641 Brassica carinata HOM05D006722 ORTHO05D007944 7.5e-16 87.8 87 56.3
CARHR235870 Cardamine hirsuta HOM05D006722 ORTHO05D007944 9.9e-16 87.4 89 52.8
AL7G24440 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 1.1e-14 84.0 149 39.6
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 3.2e-14 82.4 129 45.7
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 5.4e-14 81.6 120 45.0
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 7.1e-14 81.3 129 44.2
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 4.6e-13 78.6 118 44.1
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 1.3e-12 77.0 138 42.0
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 2.3e-12 76.3 109 48.6
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 2.3e-12 76.3 135 43.7
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 3.0e-12 75.9 109 43.1
BcaC09g50509 Brassica carinata HOM05D006722 ORTHO05D007944 5.1e-12 75.1 119 38.7
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 5.1e-12 75.1 130 45.4
Carub.0007s1261 Capsella rubella HOM05D006722 ORTHO05D007944 5.1e-12 75.1 136 35.3
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 5.1e-12 75.1 116 42.2
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 6.6e-12 74.7 121 42.1
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 8.6e-12 74.3 108 42.6
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 2.5e-11 72.8 113 39.8
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 4.3e-11 72.0 133 38.3
AT4G28160 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 4.3e-11 72.0 118 40.7
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 4.3e-11 72.0 112 43.8
Cpa.g.sc34.125 Carica papaya HOM05D006722 ORTHO05D007944 5.6e-11 71.6 200 32.0
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.2e-10 70.5 116 41.4
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 1.2e-10 70.5 134 40.3
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 1.2e-10 70.5 130 38.5
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 1.6e-10 70.1 149 37.6
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 1.6e-10 70.1 138 41.3
BolC1t02409H Brassica oleracea HOM05D006722 ORTHO05D007944 2.1e-10 69.7 119 37.0
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 3.6e-10 68.9 111 42.3
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 4.7e-10 68.6 134 39.6
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 6.2e-10 68.2 134 38.1
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 6.2e-10 68.2 101 48.5
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 8.1e-10 67.8 129 39.5
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 8.1e-10 67.8 129 39.5
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 1.8e-09 66.6 127 41.7
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 1.8e-09 66.6 104 45.2
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 2.4e-09 66.2 114 44.7
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 3.1e-09 65.9 151 39.7
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 3.1e-09 65.9 91 49.5
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 8.9e-09 64.3 123 42.3
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 2.0e-08 63.2 137 35.0
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 2.0e-08 63.2 133 38.3
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 2.6e-08 62.8 110 36.4
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 4.4e-08 62.0 135 40.7
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 4.4e-08 62.0 91 44.0
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 7.6e-08 61.2 91 42.9
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 9.9e-08 60.8 122 43.4
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 9.9e-08 60.8 118 35.6
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 1.3e-07 60.5 132 34.8
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 3.8e-07 58.9 128 38.3
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 3.8e-07 58.9 121 36.4
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 3.8e-07 58.9 117 34.2
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 4.9e-07 58.5 141 36.2
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 4.9e-07 58.5 141 36.2
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 4.9e-07 58.5 141 36.2
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 6.4e-07 58.2 130 37.7
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 1.9e-06 56.6 123 35.8
Ca_05301_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 3.2e-06 55.8 134 35.1
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 3.2e-06 55.8 131 32.8
Gohir.D06G117266 Gossypium hirsutum HOM05D006722 ORTHO05D007944 7.1e-06 54.7 140 37.9
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 9.2e-06 54.3 109 38.5
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 9.2e-06 54.3 133 33.1


User provided reference genes

Program Settings