Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 6.8e-72 273.9 135 100.0
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-66 255.8 141 90.8
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-66 255.8 141 90.8
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 4.7e-65 251.1 141 87.9
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 6.1e-65 250.8 141 87.9
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.0e-64 250.0 141 87.9
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.4e-64 249.6 141 87.2
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-64 249.6 138 91.3
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-64 249.6 138 91.3
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.4e-64 249.6 138 91.3
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.4e-64 249.6 138 91.3
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.8e-64 249.2 141 87.9
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.1e-61 240.0 141 84.4
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.4e-61 238.8 141 83.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 5.4e-61 237.7 141 82.3
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 9.2e-61 236.9 141 83.0
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.6e-60 236.1 141 81.6
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.6e-60 236.1 141 81.6
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.6e-60 234.6 141 80.9
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.6e-60 234.6 169 72.2
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.6e-60 234.6 141 80.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.6e-60 234.6 141 80.1
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.0e-59 233.4 140 81.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.7e-59 232.6 140 81.4
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 3.0e-59 231.9 140 81.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.9e-59 231.5 140 80.7
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 3.9e-59 231.5 139 82.0
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.0e-59 231.1 140 81.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.0e-59 231.1 140 81.4
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 5.0e-59 231.1 140 81.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 5.0e-59 231.1 140 80.0
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 5.0e-59 231.1 139 82.0
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.6e-59 230.7 140 80.7
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 8.6e-59 230.3 140 80.0
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.9e-58 229.2 140 80.0
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.9e-58 229.2 138 81.2
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.9e-58 229.2 140 80.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.5e-58 228.8 140 80.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.5e-58 228.8 140 80.0
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.5e-58 228.8 140 80.0
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.3e-58 228.4 139 80.6
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.3e-58 228.4 140 79.3
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 3.3e-58 228.4 140 80.0
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.3e-58 228.4 140 80.0
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 4.3e-58 228.0 140 80.0
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 5.6e-58 227.6 140 79.3
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 5.6e-58 227.6 140 79.3
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 5.6e-58 227.6 140 80.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.6e-58 227.6 140 80.0
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.3e-58 227.3 140 79.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 7.3e-58 227.3 140 79.3
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 9.5e-58 226.9 140 77.9
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 9.5e-58 226.9 140 80.0
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 9.5e-58 226.9 140 80.0
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 9.5e-58 226.9 140 80.0
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-57 226.5 139 79.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.2e-57 226.5 138 81.9
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.6e-57 226.1 140 77.9
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 2.1e-57 225.7 140 77.9
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 79.3
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.8e-57 225.3 140 77.9
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 3.6e-57 224.9 140 78.6
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.7e-57 224.6 139 79.9
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 4.7e-57 224.6 140 78.6
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 8.0e-57 223.8 140 78.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 8.0e-57 223.8 140 77.1
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-56 223.4 140 76.4
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.0e-56 223.4 140 77.9
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.0e-56 223.4 140 77.9
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.4e-56 223.0 140 76.4
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.4e-56 223.0 140 76.4
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.4e-56 223.0 140 77.9
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 1.8e-56 222.6 140 76.4
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 2.3e-56 222.2 140 77.1
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 2.3e-56 222.2 140 77.1
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.1e-56 221.9 140 77.1
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.1e-56 221.9 140 75.7
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 3.1e-56 221.9 140 77.1
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 4.0e-56 221.5 140 77.1
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 4.0e-56 221.5 140 77.1
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 5.2e-56 221.1 140 77.1
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.8e-56 220.7 140 75.7
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 6.8e-56 220.7 140 75.7
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.2e-55 219.9 140 75.7
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.5e-55 219.5 136 77.9
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 2.6e-55 218.8 136 77.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 2.6e-55 218.8 138 76.8
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 4.4e-55 218.0 140 74.3
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 4.4e-55 218.0 139 77.0
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 5.8e-55 217.6 138 76.8
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 9.8e-55 216.9 139 76.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.7e-54 216.1 138 75.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.7e-54 216.1 150 74.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 4.9e-54 214.5 166 65.1
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 6.4e-54 214.2 138 76.1
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 8.3e-54 213.8 138 75.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.4e-53 213.0 138 76.1
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.4e-53 213.0 163 66.9
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 7.0e-53 210.7 128 79.7
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.0e-52 209.1 139 74.1
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.0e-52 207.6 138 71.7
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.1e-50 203.4 138 70.3
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.9e-50 202.6 204 55.4
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 9.5e-50 200.3 114 86.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 1.2e-49 199.9 138 68.8
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 4.0e-48 194.9 200 54.5
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 6.8e-48 194.1 138 64.5
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.2e-47 193.4 152 65.8
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.3e-46 189.9 140 67.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.9e-45 186.0 138 62.3
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 4.1e-45 184.9 135 65.9
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.3e-43 179.9 122 72.1
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 8.6e-43 177.2 138 58.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 4.3e-42 174.9 160 58.8
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.1e-40 170.2 133 59.4
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.7e-36 155.6 100 76.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 8.6e-35 150.6 97 74.2
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 1.9e-34 149.4 99 74.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 8.4e-30 134.0 116 61.2
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.5e-28 128.6 70 87.1
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.1e-27 124.8 69 88.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.6e-27 124.4 69 85.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-25 120.2 70 80.0
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 2.0e-23 112.8 138 44.2
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 1.5e-18 96.7 140 43.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.2e-12 77.0 53 64.2
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 2.7e-12 75.9 53 69.8
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 2.4e-08 62.8 155 29.7
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 1.2e-07 60.5 163 27.6
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.6e-07 59.3 36 69.4
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 3.4e-07 58.9 37 73.0


User provided reference genes

Program Settings