Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 9.2e-34 146.4 76 100.0
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 8.1e-14 80.1 58 74.1
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 6.8e-13 77.0 62 67.7
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 2.0e-12 75.5 62 66.1
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 5.8e-12 73.9 62 64.5
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 5.8e-12 73.9 62 64.5
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 9.9e-12 73.2 60 65.0
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 1.3e-11 72.8 62 62.9
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.3e-11 72.8 62 64.5
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.9e-11 70.9 65 60.0
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 4.9e-11 70.9 61 60.7
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 8.4e-11 70.1 56 66.1
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 8.4e-11 70.1 60 61.7
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 8.4e-11 70.1 61 59.0
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.1e-10 69.7 58 62.1
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.4e-10 69.3 60 61.7
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.4e-10 69.3 60 61.7
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.9e-10 68.9 61 60.7
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.4e-10 68.6 60 60.0
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.2e-10 68.2 60 58.3
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 3.2e-10 68.2 60 60.0
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 3.2e-10 68.2 60 60.0
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 3.2e-10 68.2 60 61.7
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.2e-10 68.2 61 59.0
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.1e-10 67.8 52 69.2
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.1e-10 67.8 59 61.0
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 4.1e-10 67.8 60 60.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 4.1e-10 67.8 60 60.0
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 4.1e-10 67.8 60 60.0
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 5.4e-10 67.4 59 57.6
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 5.4e-10 67.4 59 57.6
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 5.4e-10 67.4 59 61.0
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 5.4e-10 67.4 57 61.4
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 7.1e-10 67.0 57 61.4
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.1e-10 67.0 55 60.0
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 7.1e-10 67.0 59 61.0
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 7.1e-10 67.0 60 60.0
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 7.1e-10 67.0 65 55.4
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 9.2e-10 66.6 61 57.4
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 9.2e-10 66.6 66 54.5
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 9.2e-10 66.6 60 60.0
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 9.2e-10 66.6 60 58.3
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 9.2e-10 66.6 60 58.3
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 9.2e-10 66.6 60 58.3
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-09 66.2 60 58.3
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-09 66.2 52 67.3
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.2e-09 66.2 60 56.7
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 1.2e-09 66.2 60 58.3
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.2e-09 66.2 59 55.9
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 1.2e-09 66.2 57 63.2
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 1.2e-09 66.2 57 61.4
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.2e-09 66.2 58 60.3
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.2e-09 66.2 60 60.0
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 1.2e-09 66.2 60 58.3
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.6e-09 65.9 66 56.1
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.6e-09 65.9 66 56.1
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.6e-09 65.9 64 54.7
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.6e-09 65.9 60 58.3
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.6e-09 65.9 57 61.4
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 2.1e-09 65.5 59 57.6
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 2.1e-09 65.5 59 55.9
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.7e-09 65.1 59 59.3
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.7e-09 65.1 59 57.6
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 56.7
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 56.7
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 58.3
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 58.3
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 56.7
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 2.7e-09 65.1 60 58.3
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.7e-09 65.1 64 53.1
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 2.7e-09 65.1 64 53.1
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 3.5e-09 64.7 60 56.7
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 3.5e-09 64.7 61 59.0
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 3.5e-09 64.7 59 55.9
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 3.5e-09 64.7 59 57.6
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 3.5e-09 64.7 59 59.3
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 3.5e-09 64.7 60 58.3
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 3.5e-09 64.7 64 53.1
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 6.0e-09 63.9 60 56.7
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 6.0e-09 63.9 60 55.0
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 6.0e-09 63.9 59 57.6
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 7.8e-09 63.5 60 56.7
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.8e-09 63.5 56 57.1
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 7.8e-09 63.5 60 55.0
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 7.8e-09 63.5 60 55.0
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 7.8e-09 63.5 57 57.9
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.0e-08 63.2 59 57.6
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.0e-08 63.2 65 53.8
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.0e-08 63.2 59 55.9
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.3e-08 62.8 60 53.3
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.3e-08 62.8 59 55.9
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.3e-08 62.8 60 55.0
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.3e-08 62.8 60 55.0
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 1.3e-08 62.8 57 52.6
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.3e-08 62.8 59 55.9
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.7e-08 62.4 57 54.4
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.7e-08 62.4 60 55.0
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.3e-08 62.0 60 56.7
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 2.3e-08 62.0 59 55.9
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.0e-08 61.6 60 56.7
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.0e-08 61.6 60 56.7
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.0e-08 61.6 60 56.7
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 3.0e-08 61.6 57 57.9
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 3.0e-08 61.6 57 57.9
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 6.6e-08 60.5 57 56.1
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 6.6e-08 60.5 60 55.0
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 8.7e-08 60.1 52 57.7
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 1.1e-07 59.7 60 51.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.1e-07 59.7 60 51.7
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 1.1e-07 59.7 57 56.1
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.1e-07 59.7 59 54.2
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 1.5e-07 59.3 59 54.2
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.5e-07 58.5 54 57.4
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 2.5e-07 58.5 79 46.8
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 3.3e-07 58.2 61 50.8
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 3.3e-07 58.2 59 54.2
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.3e-07 58.2 56 55.4
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 4.3e-07 57.8 60 53.3
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 4.3e-07 57.8 59 54.2
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 9.6e-07 56.6 60 53.3
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 2.8e-06 55.1 60 48.3
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 2.8e-06 55.1 60 48.3
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 8.1e-06 53.5 59 52.5


User provided reference genes

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