Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.1e-76 288.9 141 100.0
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.1e-76 288.9 141 100.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 5.2e-75 284.3 141 97.2
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.2e-74 283.1 141 96.5
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.2e-74 283.1 141 97.2
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.5e-74 282.7 141 96.5
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.0e-74 282.3 141 97.2
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 6.4e-73 277.3 141 97.9
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 6.4e-73 277.3 141 97.9
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 6.4e-73 277.3 141 97.9
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 6.4e-73 277.3 141 97.9
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.7e-71 271.9 141 92.9
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 6.0e-71 270.8 141 92.2
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.3e-70 268.9 141 91.5
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.1e-70 267.7 169 79.9
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.1e-69 266.5 141 89.4
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.5e-69 266.2 141 89.4
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 3.3e-69 265.0 140 89.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 4.3e-69 264.6 141 88.7
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 4.3e-69 264.6 141 88.7
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.6e-69 264.2 140 89.3
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 7.3e-69 263.8 140 88.6
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 9.6e-69 263.5 140 89.3
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-68 263.1 141 87.2
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.2e-68 263.1 141 87.2
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.2e-68 263.1 140 88.6
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.2e-68 263.1 139 89.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-68 262.7 140 89.3
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-68 262.7 140 89.3
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.6e-68 262.7 140 89.3
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.6e-68 262.7 139 89.9
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.1e-68 262.3 140 88.6
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.1e-68 262.3 140 88.6
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 6.2e-68 260.8 140 87.9
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 6.2e-68 260.8 140 88.6
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 6.2e-68 260.8 138 89.1
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 6.2e-68 260.8 140 87.9
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 8.1e-68 260.4 139 89.2
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 1.1e-67 260.0 140 87.1
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.1e-67 260.0 140 87.9
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 1.4e-67 259.6 140 87.1
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.4e-67 259.6 140 87.9
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.4e-67 259.6 140 87.9
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.4e-67 259.6 140 87.1
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 87.1
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 87.1
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 87.9
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 87.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.4e-67 258.8 140 87.1
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.4e-67 258.8 140 87.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 2.4e-67 258.8 140 86.4
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.1e-67 258.5 139 88.5
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.1e-67 258.5 140 87.9
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 3.1e-67 258.5 140 87.9
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 3.1e-67 258.5 140 87.9
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 5.2e-67 257.7 140 85.7
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 6.9e-67 257.3 141 90.8
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 6.9e-67 257.3 140 85.7
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 87.1
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-66 256.5 139 88.5
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 86.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.0
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.0
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.0
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 86.4
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.0e-66 255.8 141 88.7
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 86.4
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 85.0
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 84.3
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.7
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.7
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 4.4e-66 254.6 140 84.3
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.4e-66 254.6 140 84.3
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 84.3
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 85.7
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 85.0
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 85.0
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.0
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 83.6
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.0
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 85.0
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 83.6
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 83.6
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 84.3
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 84.3
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 3.8e-65 251.5 136 86.0
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 83.6
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 6.4e-65 250.8 136 86.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 6.4e-65 250.8 138 85.5
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 82.9
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.1e-64 250.0 139 85.6
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.4e-64 248.8 139 84.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.4e-64 247.7 150 81.3
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.6e-63 246.1 138 84.8
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 2.1e-63 245.7 138 82.6
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 2.1e-63 245.7 138 83.3
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 3.5e-63 245.0 138 84.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.5e-63 245.0 138 83.3
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.5e-63 245.0 163 74.2
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.7e-62 242.7 128 88.3
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 2.3e-62 242.3 166 71.7
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 5.1e-62 241.1 139 82.0
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.6e-62 240.7 138 81.2
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.8e-60 235.3 138 79.0
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 6.2e-60 234.2 204 60.8
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 9.0e-59 230.3 114 96.5
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 7.6e-58 227.3 138 75.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.3e-57 226.5 200 60.0
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.7e-57 226.1 152 73.7
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.2e-55 219.9 140 74.3
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.5e-55 218.4 138 70.3
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 7.9e-55 217.2 135 74.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 2.5e-53 212.2 122 81.1
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.1e-52 209.1 138 68.1
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 3.4e-50 201.8 160 65.6
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.9e-48 196.1 133 65.4
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 7.1e-48 194.1 138 60.1
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 7.4e-45 184.1 100 85.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 2.1e-44 182.6 97 86.6
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 4.8e-44 181.4 99 85.9
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.7e-39 165.6 116 70.7
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 1.3e-28 130.2 139 48.2
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.7e-28 128.6 70 87.1
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.3e-27 124.8 69 88.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.9e-27 124.4 69 85.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-25 120.2 70 80.0
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 8.5e-25 117.5 140 48.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 5.5e-16 88.2 43 88.4
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 2.8e-12 75.9 53 69.8
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 1.4e-11 73.6 161 32.9
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 7.0e-11 71.2 163 29.4
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.0e-10 69.7 117 34.2
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.7e-10 67.8 44 68.2
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.7e-07 59.3 36 69.4
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 4.7e-07 58.5 83 41.0
CARHR173510 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.8e-06 56.6 27 92.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.3e-06 56.2 128 29.7


User provided reference genes

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