Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 8.8e-39 163.3 92 100.0
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 1.2e-35 152.9 92 87.0
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 5.9e-35 150.6 92 85.9
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.1e-33 146.4 92 83.7
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 2.5e-33 145.2 91 84.6
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 5.7e-30 134.0 92 75.0
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 5.7e-30 134.0 92 75.0
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 5.7e-30 134.0 92 75.0
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 1.7e-29 132.5 92 79.3
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 4.8e-29 131.0 97 72.2
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 6.3e-29 130.6 97 72.2
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 8.2e-29 130.2 94 74.5
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 8.2e-29 130.2 94 74.5
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 8.2e-29 130.2 97 72.2
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 1.1e-28 129.8 96 74.0
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 1.4e-28 129.4 93 73.1
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 1.8e-28 129.0 92 71.7
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.8e-28 129.0 96 74.0
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 1.6e-24 115.9 92 63.0
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.0e-23 113.2 92 65.2
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 2.3e-23 112.1 92 64.1
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.0e-23 111.3 92 63.0
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 5.2e-23 110.9 92 63.0
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 5.2e-23 110.9 96 60.4
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 8.8e-23 110.2 91 61.5
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 1.2e-22 109.8 92 64.1
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 1.2e-22 109.8 92 65.2
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 1.5e-22 109.4 92 64.1
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 2.0e-22 109.0 92 63.0
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 2.6e-22 108.6 92 63.0
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 3.4e-22 108.2 92 64.1
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.4e-22 108.2 91 62.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.4e-22 108.2 91 62.6
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 3.4e-22 108.2 92 60.9
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 3.4e-22 108.2 98 70.4
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 4.4e-22 107.8 92 64.1
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 5.7e-22 107.5 95 63.2
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 5.7e-22 107.5 98 60.2
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.7e-22 107.5 92 60.9
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 9.8e-22 106.7 92 60.9
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 9.8e-22 106.7 93 63.4
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 1.7e-21 105.9 91 61.5
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.7e-21 105.9 91 61.5
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.2e-21 105.5 92 60.9
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 2.2e-21 105.5 92 60.9
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 2.8e-21 105.1 94 61.7
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 3.7e-21 104.8 91 61.5
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 3.7e-21 104.8 92 62.0
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 6.3e-21 104.0 92 62.0
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 8.3e-21 103.6 92 60.9
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 1.4e-20 102.8 92 59.8
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 5.4e-20 100.9 91 57.1
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 7.0e-20 100.5 92 55.4
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 7.0e-20 100.5 54 87.0
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 9.1e-20 100.1 92 62.0
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 9.1e-20 100.1 96 63.5
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.2e-19 99.8 91 59.3
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 1.2e-19 99.8 91 57.1
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 1.2e-19 99.8 91 57.1
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 1.6e-19 99.4 53 88.7
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 1.6e-19 99.4 53 88.7
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 1.6e-19 99.4 53 86.8
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 2.0e-19 99.0 92 57.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 3.5e-19 98.2 91 58.2
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 3.5e-19 98.2 53 86.8
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.5e-19 97.8 56 83.9
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 5.9e-19 97.4 92 60.9
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 1.0e-18 96.7 53 86.8
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 1.3e-18 96.3 92 57.6
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 1.3e-18 96.3 92 57.6
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.7e-18 95.9 92 55.4
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 2.2e-18 95.5 91 58.2
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 2.2e-18 95.5 91 57.1
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 2.2e-18 95.5 96 56.2
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 3.8e-18 94.7 92 57.6
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 3.8e-18 94.7 92 57.6
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 5.0e-18 94.4 91 57.1
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 5.0e-18 94.4 91 57.1
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 6.5e-18 94.0 92 57.6
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 6.5e-18 94.0 94 64.9
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 8.5e-18 93.6 92 57.6
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 1.1e-17 93.2 52 82.7
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 1.9e-17 92.4 79 60.8
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 2.5e-17 92.0 53 83.0
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 7.2e-17 90.5 80 62.5
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.2e-16 89.7 53 77.4
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 3.6e-16 88.2 79 59.5
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 1.8e-15 85.9 79 59.5
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 3.0e-15 85.1 98 51.0
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 3.0e-15 85.1 81 56.8
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 4.4e-14 81.3 79 57.0
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.3e-13 79.7 80 57.5
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.7e-13 79.3 84 52.4
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 2.2e-13 79.0 77 55.8
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.1e-12 76.6 80 55.0
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 1.4e-12 76.3 82 53.7
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 1.8e-12 75.9 77 53.2
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 5.4e-12 74.3 75 54.7
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 5.4e-12 74.3 77 55.8
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 7.0e-12 73.9 41 85.4
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 1.6e-11 72.8 50 78.0
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 4.5e-11 71.2 41 82.9
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 3.8e-10 68.2 80 51.2
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 5.0e-10 67.8 79 54.4
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 5.0e-10 67.8 39 79.5
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 8.6e-10 67.0 76 47.4
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 8.6e-10 67.0 40 80.0
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 2.5e-09 65.5 40 80.0
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 2.8e-08 62.0 43 67.4


User provided reference genes

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