Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 4.2e-125 451.4 242 100.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 4.2e-125 451.4 242 100.0
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 1.5e-122 443.0 242 99.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 6.3e-121 437.6 242 97.9
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 4.1e-120 434.9 242 97.5
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.7e-119 432.2 243 97.5
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 7.8e-119 430.6 242 96.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.0e-118 430.3 242 96.7
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.0e-118 430.3 242 96.7
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 5.0e-118 427.9 245 96.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.1e-117 426.8 242 95.5
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 3.3e-117 425.2 245 96.3
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 9.5e-117 423.7 247 94.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 9.5e-117 423.7 242 94.2
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 1.7e-113 412.9 242 92.1
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 4.9e-113 411.4 242 91.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 9.2e-112 407.1 242 90.5
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.1e-107 393.7 242 86.4
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.4e-98 361.7 242 80.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 7.6e-98 360.9 242 80.6
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 9.9e-98 360.5 243 80.2
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.1e-91 340.5 196 91.8
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 73.1
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 74.0
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 4.4e-90 335.1 241 72.6
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.3e-89 333.6 242 72.7
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.7e-89 333.2 244 73.0
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 70.2
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 72.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 72.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 3.2e-88 328.9 242 71.1
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 4.2e-88 328.6 242 72.7
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 7.1e-88 327.8 242 72.3
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 71.9
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 71.9
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.7e-87 325.9 242 71.5
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 71.9
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 7.8e-87 324.3 242 71.9
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.0e-86 323.9 242 69.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.3e-86 323.6 242 70.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 71.1
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 70.7
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 71.5
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 71.1
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 70.4
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 71.6
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.0e-86 322.4 242 70.7
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.9e-86 322.0 242 71.1
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 5.1e-86 321.6 242 69.4
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 6.6e-86 321.2 242 68.6
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 69.0
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 71.6
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 70.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 70.7
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.1e-85 320.5 242 69.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 71.2
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 3.3e-85 318.9 242 69.0
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.3e-85 318.9 245 69.4
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 5.6e-85 318.2 242 70.2
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 227 71.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 9.6e-85 317.4 244 68.4
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 2.1e-84 316.2 243 70.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.1e-84 316.2 242 70.2
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.8e-84 315.8 242 66.9
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.8e-84 315.1 244 70.1
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 8.1e-84 314.3 243 68.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 8.1e-84 314.3 240 71.2
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.1e-83 313.9 244 68.4
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.1e-83 313.9 242 67.8
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.8e-83 313.2 244 67.6
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 3.1e-83 312.4 242 69.4
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.1e-83 312.4 243 69.1
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 3.1e-83 312.4 245 68.6
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.2e-82 310.5 243 67.9
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.2e-82 310.5 240 70.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 2.0e-82 309.7 239 70.3
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 3.4e-82 308.9 243 68.3
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.4e-82 308.5 243 67.1
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 7.6e-82 307.8 242 66.9
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.3e-81 307.0 242 66.5
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.3e-81 307.0 283 62.2
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.9e-81 305.8 244 67.6
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 68.9
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 6.4e-81 304.7 243 67.1
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.4e-80 302.8 242 65.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 3.2e-80 302.4 238 68.1
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 4.2e-80 302.0 242 66.1
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 7.1e-80 301.2 243 65.0
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.2e-79 300.4 271 61.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.7e-79 299.3 242 68.6
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.7e-79 299.3 243 65.8
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 3.5e-79 298.9 243 67.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 3.5e-79 298.9 242 65.3
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 3.5e-79 298.9 243 65.4
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 4.6e-79 298.5 243 65.0
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.9e-79 297.7 243 65.8
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 7.9e-79 297.7 243 65.8
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.7e-78 296.6 243 66.7
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 5.1e-78 295.0 246 65.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 8.7e-78 294.3 221 70.1
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.9e-77 293.1 258 63.6
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.3e-77 292.0 224 67.4
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.6e-76 290.0 221 67.9
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.6e-76 288.9 222 67.6
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-75 287.3 227 67.4
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.1e-75 287.3 258 62.8
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.1e-75 285.8 197 75.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 4.0e-75 285.4 222 68.9
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 6.9e-75 284.6 282 59.6
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 9.0e-75 284.3 202 70.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.4e-74 282.3 224 66.5
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 4.5e-74 282.0 279 58.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 5.8e-74 281.6 196 74.5
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 5.8e-74 281.6 291 55.3
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 5.8e-74 281.6 244 61.9
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 7.6e-74 281.2 196 73.5
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.7e-73 280.0 196 73.0
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.7e-73 280.0 244 61.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.1e-72 277.3 231 63.2
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.1e-72 274.6 196 70.9
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.3e-72 274.2 196 69.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.3e-72 274.2 199 71.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.6e-71 273.5 199 71.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 204 70.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 199 71.4
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 4.6e-71 271.9 196 71.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.0e-70 269.2 276 55.4
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 4.6e-63 245.4 175 72.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.8e-62 243.4 243 57.6
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.6e-60 236.9 221 59.3
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 8.2e-60 234.6 188 63.8
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.8e-59 233.4 180 67.2
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 6.7e-54 214.9 155 72.9
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.5e-53 213.8 196 61.2
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.3e-49 200.7 211 54.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.0e-46 189.5 135 69.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-45 187.6 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.6e-39 166.0 112 77.7
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.2e-34 151.0 149 56.4
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.2e-33 146.7 131 58.0
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.2e-32 141.7 223 45.3
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.0e-30 136.3 162 49.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.8e-28 129.8 213 38.0
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.0e-25 121.3 217 35.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.9e-25 119.8 233 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 9.4e-24 114.8 241 32.4
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 6.1e-23 112.1 194 36.6
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.0e-22 111.3 194 36.1
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 2.2e-20 103.6 99 54.5
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-19 101.3 236 33.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 5.9e-18 95.5 97 50.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 5.0e-17 92.4 84 63.1
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.7e-12 76.3 179 36.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 6.3e-12 75.5 62 58.1
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-10 71.2 50 82.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-10 70.9 40 97.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.6e-10 70.9 64 60.9
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 5.0e-09 65.9 138 40.6


User provided reference genes

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