Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 3.0e-41 171.4 85 100.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 4.6e-18 94.4 64 78.1
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 4.8e-15 84.3 76 67.1
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 65.8
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 65.8
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 65.8
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 6.3e-15 84.0 76 67.1
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 6.3e-15 84.0 52 80.8
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 8.2e-15 83.6 60 73.3
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 8.2e-15 83.6 76 67.1
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 1.1e-14 83.2 76 65.8
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 1.1e-14 83.2 76 64.5
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 1.4e-14 82.8 76 64.5
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 1.4e-14 82.8 76 64.5
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 1.4e-14 82.8 76 65.8
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.4e-14 82.8 76 65.8
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 1.4e-14 82.8 76 65.8
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 5.3e-14 80.9 76 65.8
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 4.5e-13 77.8 52 73.1
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.5e-13 77.8 47 83.0
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 7.7e-13 77.0 48 75.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.0e-12 76.6 51 74.5
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.0e-12 76.6 49 81.6
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.7e-12 75.9 47 78.7
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 2.2e-12 75.5 47 78.7
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 2.2e-12 75.5 47 78.7
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.9e-12 75.1 47 76.6
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 3.8e-12 74.7 47 76.6
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 3.8e-12 74.7 47 78.7
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 5.0e-12 74.3 47 76.6
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.0e-12 74.3 74 58.1
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 5.0e-12 74.3 47 74.5
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 6.5e-12 73.9 47 76.6
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.9e-11 72.4 47 74.5
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.5e-11 72.0 74 55.4
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 72.3
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 72.3
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 72.3
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 72.3
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 72.3
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 3.2e-11 71.6 47 74.5
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 4.2e-11 71.2 47 72.3
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 4.2e-11 71.2 47 72.3
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 4.2e-11 71.2 47 74.5
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 4.2e-11 71.2 47 74.5
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.2e-11 71.2 76 53.9
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 5.5e-11 70.9 47 74.5
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 7.2e-11 70.5 47 74.5
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 7.2e-11 70.5 47 72.3
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 7.2e-11 70.5 74 52.7
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 7.2e-11 70.5 47 72.3
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 7.2e-11 70.5 47 74.5
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 9.4e-11 70.1 47 74.5
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.2e-10 69.7 47 72.3
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 1.2e-10 69.7 49 71.4
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 1.6e-10 69.3 47 74.5
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.1e-10 68.9 73 53.4
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 2.1e-10 68.9 49 69.4
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.7e-10 68.6 47 68.1
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 2.7e-10 68.6 76 53.9
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.7e-10 68.6 47 70.2
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 2.7e-10 68.6 49 67.3
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 2.7e-10 68.6 47 70.2
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 2.7e-10 68.6 47 70.2
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 2.7e-10 68.6 74 51.4
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 3.6e-10 68.2 49 69.4
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 3.6e-10 68.2 47 68.1
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.6e-10 68.2 47 68.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 3.6e-10 68.2 47 70.2
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 3.6e-10 68.2 49 67.3
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 4.6e-10 67.8 47 68.1
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 4.6e-10 67.8 47 68.1
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 4.6e-10 67.8 50 70.0
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 4.6e-10 67.8 47 68.1
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 72.3
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 68.1
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 68.1
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 70.2
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 70.2
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 70.2
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 70.2
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 70.2
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 6.1e-10 67.4 47 68.1
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 6.1e-10 67.4 49 65.3
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 7.9e-10 67.0 47 68.1
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 7.9e-10 67.0 47 70.2
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 1.0e-09 66.6 47 72.3
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 1.0e-09 66.6 76 51.3
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 1.0e-09 66.6 47 66.0
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.4e-09 66.2 47 68.1
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.4e-09 66.2 47 68.1
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.4e-09 66.2 47 68.1
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.4e-09 66.2 47 68.1
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 1.4e-09 66.2 47 68.1
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.8e-09 65.9 48 66.7
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.8e-09 65.9 47 68.1
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.3e-09 65.5 47 66.0
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.3e-09 65.5 49 67.3
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 2.3e-09 65.5 47 68.1
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.0e-09 65.1 49 67.3
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 3.0e-09 65.1 47 68.1
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 3.0e-09 65.1 47 66.0
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.0e-09 65.1 51 64.7
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 3.0e-09 65.1 49 67.3
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 3.0e-09 65.1 47 66.0
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 3.0e-09 65.1 49 67.3
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 3.9e-09 64.7 47 66.0
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 3.9e-09 64.7 41 85.4
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 3.9e-09 64.7 41 85.4
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 3.9e-09 64.7 47 68.1
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 3.9e-09 64.7 46 69.6
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 5.1e-09 64.3 47 66.0
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 5.1e-09 64.3 49 65.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 5.1e-09 64.3 47 68.1
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 5.1e-09 64.3 47 63.8
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 6.7e-09 63.9 47 63.8
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 6.7e-09 63.9 47 63.8
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 6.7e-09 63.9 47 66.0
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 6.7e-09 63.9 74 50.0
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 8.8e-09 63.5 47 66.0
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 8.8e-09 63.5 47 63.8
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 1.1e-08 63.2 41 82.9
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.1e-08 63.2 47 66.0
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.1e-08 63.2 47 66.0
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.1e-08 63.2 47 68.1
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.1e-08 63.2 47 66.0
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 1.1e-08 63.2 47 66.0
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 1.5e-08 62.8 74 48.6
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.5e-08 62.8 50 62.0
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.5e-08 62.8 49 63.3
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.5e-08 62.8 49 65.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.9e-08 62.4 47 66.0
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.9e-08 62.4 47 66.0
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.9e-08 62.4 49 63.3
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.9e-08 62.4 47 63.8
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.9e-08 62.4 47 63.8
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 62.0 47 66.0
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 62.0 47 66.0
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.5e-08 62.0 47 66.0
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.5e-08 62.0 47 63.8
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.5e-08 62.0 47 66.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 2.5e-08 62.0 50 62.0
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 3.3e-08 61.6 47 66.0
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 4.3e-08 61.2 47 61.7
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 5.7e-08 60.8 47 61.7
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 7.4e-08 60.5 36 88.9
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 9.7e-08 60.1 50 60.0
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 1.3e-07 59.7 41 70.7
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.7e-07 59.3 47 63.8
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 2.8e-07 58.5 49 59.2
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.7e-07 58.2 47 61.7
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.7e-07 58.2 47 63.8
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 8.2e-07 57.0 45 71.1
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 1.1e-06 56.6 47 59.6
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 1.4e-06 56.2 47 66.0
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 1.8e-06 55.8 36 83.3
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 1.8e-06 55.8 36 83.3
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.8e-06 55.8 47 59.6
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 3.1e-06 55.1 32 84.4
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 4.1e-06 54.7 47 59.6
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 5.3e-06 54.3 47 53.2
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 6.9e-06 53.9 50 56.0


User provided reference genes

Program Settings