Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 1.9e-164 582.4 290 100.0
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 1.3e-160 569.7 301 95.7
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 1.3e-160 569.7 301 95.7
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 2.9e-128 462.2 314 78.0
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 3.2e-127 458.8 310 79.0
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 7.0e-42 175.3 286 42.3
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 6.0e-41 172.2 278 41.7
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 7.8e-41 171.8 345 37.7
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.0e-40 171.4 187 48.7
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 1.0e-40 171.4 285 41.1
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 1.0e-40 171.4 286 40.9
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.9e-40 169.5 187 48.7
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.6e-40 168.3 196 50.5
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.1e-39 167.9 186 48.9
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.6e-38 164.1 192 47.4
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 2.1e-38 163.7 171 50.3
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 2.1e-38 163.7 171 50.3
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 3.6e-38 162.9 171 50.3
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 4.7e-38 162.5 187 46.5
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.7e-38 162.5 178 48.9
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 6.2e-38 162.2 186 49.5
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 8.1e-38 161.8 171 49.7
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 8.1e-38 161.8 171 49.7
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.4e-37 161.0 196 47.4
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.5e-36 157.5 165 50.9
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 9.8e-36 154.8 192 49.0
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.4e-34 151.0 170 46.5
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 9.5e-31 138.3 169 43.2
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.1e-30 137.1 176 41.5
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.4e-26 123.6 191 36.6
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.2e-25 121.3 161 44.1
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.7e-25 120.2 161 43.5
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.7e-25 120.2 161 43.5
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 7.8e-25 118.6 166 40.4
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.7e-24 117.5 168 37.5
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.7e-24 117.5 261 34.9
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 3.9e-24 116.3 162 35.8
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 3.9e-24 116.3 174 33.9
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.9e-24 116.3 174 33.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.5e-23 114.4 160 36.9
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.5e-23 114.4 168 36.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.9e-23 114.0 169 36.7
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.5e-23 113.6 170 42.4
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 5.6e-23 112.5 168 40.5
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 9.6e-23 111.7 156 40.4
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 1.2e-22 111.3 188 38.3
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.2e-22 111.3 169 39.6
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.2e-22 111.3 185 34.6
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.6e-22 110.9 152 37.5
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 3.6e-22 109.8 191 38.2
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.6e-22 109.8 133 40.6
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.6e-22 109.8 141 41.1
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.6e-22 109.8 140 41.4
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 8.1e-22 108.6 156 39.7
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.1e-21 108.2 160 38.8
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.1e-21 108.2 167 40.7
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.1e-21 108.2 163 34.4
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.8e-21 107.5 163 33.7
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 3.1e-21 106.7 178 33.7
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.1e-21 106.7 175 37.7
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 5.2e-21 105.9 149 38.9
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 5.2e-21 105.9 157 35.7
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 6.9e-21 105.5 163 33.7
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 6.9e-21 105.5 138 38.4
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.2e-20 104.8 141 38.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.5e-20 104.4 159 36.5
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 1.5e-20 104.4 171 35.1
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 2.0e-20 104.0 141 38.3
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.0e-20 104.0 149 38.9
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.6e-20 103.6 124 42.7
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 2.6e-20 103.6 164 34.8
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 2.6e-20 103.6 163 41.1
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 7.6e-20 102.1 132 38.6
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 1.3e-19 101.3 153 37.3
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.7e-19 100.9 189 33.9
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 2.2e-19 100.5 225 32.0
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.2e-19 100.5 140 35.7
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 2.9e-19 100.1 163 36.2
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.9e-19 99.4 166 37.3
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 4.9e-19 99.4 167 37.7
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.4e-19 99.0 131 35.9
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.4e-19 98.6 190 34.7
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 8.4e-19 98.6 184 36.4
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 2.4e-18 97.1 277 32.1
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 3.2e-18 96.7 305 26.2
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 3.2e-18 96.7 160 35.0
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 3.2e-18 96.7 172 32.0
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 5.4e-18 95.9 186 36.0
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 5.4e-18 95.9 153 35.3
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 7.1e-18 95.5 185 40.0
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 7.1e-18 95.5 151 35.1
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 9.3e-18 95.1 138 37.7
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.2e-17 94.7 169 30.8
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.2e-17 94.7 245 33.9
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 1.2e-17 94.7 161 36.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 2.7e-17 93.6 147 35.4
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 2.7e-17 93.6 152 32.9
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 3.5e-17 93.2 144 34.7
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.5e-17 93.2 124 38.7
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 4.6e-17 92.8 160 35.0
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.6e-17 92.8 151 39.1
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.6e-17 92.8 173 34.7
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.6e-17 92.8 151 39.1
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 7.8e-17 92.0 192 34.9
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 1.0e-16 91.7 171 37.4
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.3e-16 91.3 199 28.6
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.3e-16 91.3 191 28.3
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.7e-16 90.9 109 40.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.7e-16 90.9 192 35.9
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.3e-16 90.5 49 71.4
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.0e-16 90.1 94 41.5
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.9e-16 89.7 76 57.9
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 5.1e-16 89.4 94 40.4
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 6.6e-16 89.0 184 35.9
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.5e-15 87.8 195 33.3
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.9e-15 87.4 178 29.8
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 5.6e-15 85.9 163 37.4
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.6e-14 84.3 127 37.8
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.1e-14 84.0 95 38.9
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 2.8e-14 83.6 191 34.6
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.1e-13 81.6 131 34.4
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 1.8e-13 80.9 187 33.2
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.4e-13 80.5 159 28.9
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.1e-13 80.1 199 28.1
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 3.1e-13 80.1 189 28.6
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.0e-13 78.6 95 41.1
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 1.2e-12 78.2 168 25.6
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 1.2e-12 78.2 160 30.0
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.5e-12 77.8 68 47.1
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 2.0e-12 77.4 163 31.9
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.0e-12 77.4 191 27.7
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 4.5e-12 76.3 167 34.7
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 7.6e-12 75.5 93 34.4
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.9e-12 75.1 98 36.7
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.7e-11 74.3 133 30.1
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.2e-11 73.9 141 33.3
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 2.9e-11 73.6 112 39.3
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 3.8e-11 73.2 167 28.1
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.9e-11 72.8 138 31.9
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.4e-11 72.0 98 35.7
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.1e-10 71.6 60 46.7
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.1e-10 71.6 140 33.6
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.4e-10 71.2 147 34.7
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 1.4e-10 71.2 161 32.3
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.9e-10 70.9 94 36.2
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 7.1e-10 68.9 110 34.5
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.2e-09 68.2 157 29.9
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.6e-09 67.8 98 35.7
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.1e-09 67.4 127 33.9
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 2.7e-09 67.0 160 30.6
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 3.5e-09 66.6 304 25.3
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 3.5e-09 66.6 45 55.6
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 4.6e-09 66.2 167 28.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 7.9e-09 65.5 160 33.1
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.0e-08 65.1 138 33.3
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.3e-08 64.7 128 31.2
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 1.3e-08 64.7 177 31.6
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.5e-07 61.2 183 31.7
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.5e-07 61.2 163 31.9
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 3.3e-07 60.1 183 31.1
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.3e-07 59.7 183 31.1
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 4.3e-07 59.7 90 28.9
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.6e-06 57.8 87 46.0
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.1e-06 57.4 267 25.5
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 3.7e-06 56.6 73 31.5
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.1e-06 55.5 93 36.6


User provided reference genes

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