Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 3.0e-74 282.0 165 100.0
BolC8t51560H Brassica oleracea HOM05D000988 ORTHO05D000724 2.8e-67 258.8 173 93.6
C08p39880 Brassica napus HOM05D000988 ORTHO05D000724 4.1e-63 245.0 171 88.9
A09p56920 Brassica napus HOM05D000988 ORTHO05D000724 1.4e-55 219.9 177 83.6
BraA09t41084Z Brassica rapa HOM05D000988 ORTHO05D000724 1.4e-55 219.9 177 83.6
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 1.3e-45 186.8 192 63.5
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 3.8e-40 168.7 204 58.8
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 1.6e-35 153.3 193 58.0
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 1.1e-34 150.6 188 58.0
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 1.4e-34 150.2 177 61.6
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 6.0e-30 134.8 218 49.5
THA.LOC104819843 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 2.6e-25 119.4 192 42.2
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 2.4e-15 86.3 78 60.3
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 1.3e-11 73.9 118 43.2
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 6.9e-10 68.2 114 41.2
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 1.5e-09 67.0 120 40.8
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 1.5e-09 67.0 116 41.4
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 2.6e-09 66.2 169 36.1
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 3.4e-09 65.9 116 39.7
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 4.5e-09 65.5 116 38.8
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 7.6e-09 64.7 169 36.1
Haze_15419 Corylus avellana HOM05D000988 ORTHO05D000724 1.3e-08 63.9 52 57.7
Nitab4.5_0001064g0030 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.3e-08 63.9 64 51.6
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 1.3e-08 63.9 116 39.7
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 1.3e-08 63.9 43 65.1
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 2.2e-08 63.2 122 36.1
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 2.9e-08 62.8 120 38.3
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.9e-08 62.8 177 31.6
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 2.9e-08 62.8 128 35.9
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 2.9e-08 62.8 44 59.1
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 2.9e-08 62.8 115 43.5
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 6.5e-08 61.6 119 45.4
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 6.5e-08 61.6 44 59.1
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 6.5e-08 61.6 44 59.1
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 6.5e-08 61.6 44 59.1
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 6.5e-08 61.6 57 52.6
Glyma.11G056700 Glycine max HOM05D000988 ORTHO05D000724 6.5e-08 61.6 116 38.8
Gorai.011G105400 Gossypium raimondii HOM05D000988 ORTHO05D000724 6.5e-08 61.6 158 30.4
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 6.5e-08 61.6 116 38.8
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 8.4e-08 61.2 118 39.0
arahy.Tifrunner.gnm1.ann1.U4YTZL Arachis hypogaea HOM05D000988 ORTHO05D000724 1.1e-07 60.8 123 35.8
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 1.1e-07 60.8 123 35.8
arahy.Tifrunner.gnm1.ann1.2BG7C4 Arachis hypogaea HOM05D000988 ORTHO05D000724 1.4e-07 60.5 130 34.6
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 1.4e-07 60.5 167 31.7
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 1.4e-07 60.5 178 31.5
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 1.4e-07 60.5 115 39.1
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 1.4e-07 60.5 176 29.0
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.9e-07 60.1 159 31.4
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.9e-07 60.1 174 28.2
Nitab4.5_0001034g0100 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.9e-07 60.1 49 59.2
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 1.9e-07 60.1 101 33.7
PSO170G3547 Papaver somniferum HOM05D000988 ORTHO05D000724 2.5e-07 59.7 91 41.8
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 2.5e-07 59.7 118 37.3
Carub.0001s3882 Capsella rubella HOM05D000988 ORTHO05D000724 3.2e-07 59.3 115 37.4
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 3.2e-07 59.3 120 35.0
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 3.2e-07 59.3 44 61.4
SGA_v2.0_scaffold204G41577 Striga asiatica HOM05D000988 ORTHO05D000724 3.2e-07 59.3 78 43.6
EL10Ac6g15762 Beta vulgaris HOM05D000988 ORTHO05D000724 4.2e-07 58.9 70 48.6
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 4.2e-07 58.9 69 43.5
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 4.2e-07 58.9 116 34.5
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 4.2e-07 58.9 125 33.6
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 4.2e-07 58.9 116 37.9
Ciclev10029306m.g Citrus clementina HOM05D000988 ORTHO05D000724 5.5e-07 58.5 108 38.9
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 5.5e-07 58.5 41 61.0
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 5.5e-07 58.5 119 38.7
Solyc02g090680.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 5.5e-07 58.5 176 28.4
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 7.1e-07 58.2 114 39.5
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 7.1e-07 58.2 178 29.8
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 7.1e-07 58.2 100 39.0
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.1e-07 58.2 42 61.9
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.1e-07 58.2 42 61.9
TPR.G10255 Trifolium pratense HOM05D000988 ORTHO05D000724 7.1e-07 58.2 65 44.6
Atru.chr5.2743 Acer truncatum HOM05D000988 ORTHO05D000724 9.3e-07 57.8 106 35.8
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 9.3e-07 57.8 114 42.1
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 9.3e-07 57.8 122 38.5
Solyc03g044480.3 Solanum lycopersicum HOM05D040538 ORTHO05D037719 9.3e-07 57.8 44 54.5
PGSC0003DMG400018989 Solanum tuberosum HOM05D040538 ORTHO05D037719 9.3e-07 57.8 49 61.2
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 9.3e-07 57.8 120 35.8
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 1.2e-06 57.4 115 33.9
Peaxi162Scf00047g00631 Petunia axillaris HOM05D000988 ORTHO05D000724 1.2e-06 57.4 164 32.9
unitig_32.g11764 Utricularia gibba HOM05D000988 ORTHO05D000724 1.2e-06 57.4 113 36.3
HPP92_004079 Vanilla planifolia HOM05D000988 ORTHO05D000724 1.2e-06 57.4 44 56.8
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 1.6e-06 57.0 126 34.1
HanXRQChr09g0263531 Helianthus annuus HOM05D000988 ORTHO05D000724 1.6e-06 57.0 44 54.5
Lj1g0023642 Lotus japonicus HOM05D000988 ORTHO05D000724 1.6e-06 57.0 151 32.5
Potri.005G137500 Populus trichocarpa HOM05D000988 ORTHO05D000724 1.6e-06 57.0 41 61.0
Rhsim08G0101500 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.6e-06 57.0 164 30.5
HPP92_004111 Vanilla planifolia HOM05D000988 ORTHO05D000724 1.6e-06 57.0 44 54.5
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.1e-06 56.6 120 36.7
CDE02G0861 Ceratophyllum demersum HOM05D000988 ORTHO05D000724 2.1e-06 56.6 163 31.3
Ca_19505_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 2.1e-06 56.6 44 52.3
CsaV3_7G025920 Cucumis sativus L. HOM05D000988 ORTHO05D000724 2.1e-06 56.6 44 59.1
Glyma.05G085000 Glycine max HOM05D000988 ORTHO05D000724 2.1e-06 56.6 44 56.8
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.1e-06 56.6 161 28.0
Lsat_1_v5_gn_2_45361 Lactuca sativa HOM05D000988 ORTHO05D000724 2.1e-06 56.6 47 59.6
Lsat_1_v5_gn_3_91021 Lactuca sativa HOM05D000988 ORTHO05D000724 2.1e-06 56.6 73 43.8
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 2.1e-06 56.6 116 37.9
PGSC0003DMG400029660 Solanum tuberosum HOM05D000988 ORTHO05D000724 2.1e-06 56.6 47 57.4
Actinidia11410 Actinidia chinensis HOM05D000988 ORTHO05D000724 2.7e-06 56.2 188 31.4
CAN.G1041.8 Capsicum annuum HOM05D000988 ORTHO05D000724 2.7e-06 56.2 44 59.1
Lj2g0013232 Lotus japonicus HOM05D000988 ORTHO05D000724 2.7e-06 56.2 116 37.9
Sabra07G0037500 Salix brachista HOM05D000988 ORTHO05D000724 2.7e-06 56.2 121 37.2
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 2.7e-06 56.2 45 57.8
HPP92_027221 Vanilla planifolia HOM05D000988 ORTHO05D000724 2.7e-06 56.2 45 53.3
ECA238G1779 Erigeron canadensis HOM05D000988 ORTHO05D000724 3.5e-06 55.8 167 29.9
Migut.B00329 Erythranthe guttata HOM05D000988 ORTHO05D000724 3.5e-06 55.8 109 35.8
Ah.02g124190 Amaranthus hybridus HOM05D000988 ORTHO05D000724 4.6e-06 55.5 109 34.9
arahy.Tifrunner.gnm1.ann1.DEJ7H2 Arachis hypogaea HOM05D000988 ORTHO05D000724 4.6e-06 55.5 65 47.7
MSTRG.5364 Avicennia marina HOM05D000988 ORTHO05D000724 4.6e-06 55.5 44 54.5
CiPaw.05G052300 Carya illinoinensis HOM05D000988 ORTHO05D000724 4.6e-06 55.5 77 40.3
MELO3C021014.2 Cucumis melo HOM05D000988 ORTHO05D000724 4.6e-06 55.5 44 56.8
DCAR_022035 Daucus carota HOM05D000988 ORTHO05D000724 4.6e-06 55.5 61 44.3
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 4.6e-06 55.5 127 37.0
FAN27G3463 Fragaria x ananassa HOM05D000988 ORTHO05D000724 4.6e-06 55.5 44 59.1
MD05G1077300 Malus domestica HOM05D000988 ORTHO05D000724 4.6e-06 55.5 48 52.1
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 4.6e-06 55.5 106 37.7
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 4.6e-06 55.5 121 32.2
Oeu018223.2 Olea europaea HOM05D000988 ORTHO05D000724 4.6e-06 55.5 91 44.0
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 4.6e-06 55.5 115 31.3
GSVIVG01031765001 Vitis vinifera HOM05D000988 ORTHO05D000724 4.6e-06 55.5 115 38.3
Aqoxy5G01265 Aquilegia oxysepala HOM05D000988 ORTHO05D000724 6.0e-06 55.1 115 34.8
arahy.Tifrunner.gnm1.ann1.W8JU8M Arachis hypogaea HOM05D000988 ORTHO05D000724 6.0e-06 55.1 80 42.5
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 6.0e-06 55.1 117 34.2
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 6.0e-06 55.1 44 54.5
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 6.0e-06 55.1 162 29.0
Lsat_1_v5_gn_7_87140 Lactuca sativa HOM05D000988 ORTHO05D000724 6.0e-06 55.1 44 54.5
MD10G1092500 Malus domestica HOM05D000988 ORTHO05D000724 6.0e-06 55.1 47 53.2
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 7.9e-06 54.7 116 33.6
Cc02_g18650 Coffea canephora HOM05D000988 ORTHO05D000724 7.9e-06 54.7 112 37.5
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 7.9e-06 54.7 114 38.6
HanXRQChr04g0128271 Helianthus annuus HOM05D000988 ORTHO05D000724 7.9e-06 54.7 44 54.5
HanXRQChr15g0473711 Helianthus annuus HOM05D000988 ORTHO05D000724 7.9e-06 54.7 116 36.2
MBI06_g24646_MAGBIO Magnolia biondii HOM05D000988 ORTHO05D000724 7.9e-06 54.7 93 39.8
Oeu022365.1 Olea europaea HOM05D000988 ORTHO05D000724 7.9e-06 54.7 44 61.4
Peaxi162Scf00685g00069 Petunia axillaris HOM05D000988 ORTHO05D000724 7.9e-06 54.7 106 37.7
Hund13559 Selenicereus undatus HOM05D000988 ORTHO05D000724 7.9e-06 54.7 114 35.1
VMungo0251G3785 Vigna mungo HOM05D000988 ORTHO05D000724 7.9e-06 54.7 183 29.5


User provided reference genes

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