Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40940 Brassica carinata HOM05D000088 ORTHO05D092864 1.3e-45 186.0 95 100.0
BolC8t51505H Brassica oleracea HOM05D000088 ORTHO05D002762 4.6e-43 177.6 90 100.0
C08p39330 Brassica napus HOM05D000088 ORTHO05D002762 5.7e-41 170.6 90 96.7
A09p56350 Brassica napus HOM05D000088 ORTHO05D002762 9.7e-41 169.9 90 95.6
BraA09t41030Z Brassica rapa HOM05D000088 ORTHO05D002762 6.3e-40 167.2 90 93.3
Thhalv10000182m.g Eutrema salsugineum HOM05D000088 ORTHO05D002762 9.4e-36 153.3 93 91.4
Sp4g03360 Schrenkiella parvula HOM05D000088 ORTHO05D002762 3.6e-35 151.4 95 89.5
Carub.0004s0369 Capsella rubella HOM05D000088 ORTHO05D002762 7.9e-35 150.2 96 86.5
AL4G14750 Arabidopsis lyrata HOM05D000088 ORTHO05D002762 1.0e-34 149.8 96 86.5
AT2G24360 Arabidopsis thaliana HOM05D000088 ORTHO05D002762 1.0e-34 149.8 96 86.5
Aa31LG7G12390 Aethionema arabicum HOM05D000088 ORTHO05D002762 5.2e-34 147.5 93 87.1
THA.LOC104803888 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 2.8e-32 141.7 95 83.2
Aa31LG2G19140 Aethionema arabicum HOM05D000088 ORTHO05D002762 4.8e-32 141.0 96 81.2
CARHR117710 Cardamine hirsuta HOM05D000088 ORTHO05D002762 4.1e-31 137.9 98 79.6
BcaNung01538 Brassica carinata HOM05D000088 ORTHO05D002762 2.0e-30 135.6 94 79.8
Sp7g29050 Schrenkiella parvula HOM05D000088 ORTHO05D002762 1.3e-29 132.9 96 79.2
BolC4t26945H Brassica oleracea HOM05D000088 ORTHO05D002762 2.2e-29 132.1 93 78.5
BraA04t17477Z Brassica rapa HOM05D000088 ORTHO05D002762 2.2e-29 132.1 92 79.3
A03p60570 Brassica napus HOM05D000088 ORTHO05D002762 2.9e-29 131.7 94 79.8
BraA03t15098Z Brassica rapa HOM05D000088 ORTHO05D002762 2.9e-29 131.7 94 79.8
THA.LOC104819917 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 5.0e-29 131.0 96 78.1
C04p53950 Brassica napus HOM05D000088 ORTHO05D002762 6.5e-29 130.6 93 77.4
A08p18760 Brassica napus HOM05D000088 ORTHO05D002762 1.5e-28 129.4 94 78.7
C03p88140 Brassica napus HOM05D000088 ORTHO05D002762 1.5e-28 129.4 94 78.7
BolC3t21122H Brassica oleracea HOM05D000088 ORTHO05D002762 1.5e-28 129.4 94 78.7
BraA08t33837Z Brassica rapa HOM05D000088 ORTHO05D002762 1.5e-28 129.4 94 78.7
AL7G20900 Arabidopsis lyrata HOM05D000088 ORTHO05D002762 1.9e-28 129.0 96 78.1
A04p18670 Brassica napus HOM05D000088 ORTHO05D002762 1.9e-28 129.0 92 79.3
C07p58480 Brassica napus HOM05D000088 ORTHO05D002762 1.9e-28 129.0 94 78.7
BolC7t46303H Brassica oleracea HOM05D000088 ORTHO05D002762 1.9e-28 129.0 94 78.7
BcaB03g12685 Brassica carinata HOM05D000088 ORTHO05D002762 4.2e-28 127.9 94 77.7
Thhalv10025332m.g Eutrema salsugineum HOM05D000088 ORTHO05D002762 4.2e-28 127.9 96 78.1
A01p07060 Brassica napus HOM05D000088 ORTHO05D002762 1.2e-27 126.3 98 75.5
BraA01t00658Z Brassica rapa HOM05D000088 ORTHO05D002762 1.2e-27 126.3 98 75.5
BolC1t00767H Brassica oleracea HOM05D000088 ORTHO05D002762 2.1e-27 125.6 97 75.3
BcaC09g51900 Brassica carinata HOM05D000088 ORTHO05D002762 3.6e-27 124.8 98 75.5
C01p07810 Brassica napus HOM05D000088 ORTHO05D002762 3.6e-27 124.8 98 75.5
AT4G31170 Arabidopsis thaliana HOM05D000088 ORTHO05D002762 4.7e-27 124.4 96 76.0
BcaC02g08470 Brassica carinata HOM05D000088 ORTHO05D002762 6.1e-27 124.0 91 76.9
Carub.0007s0936 Capsella rubella HOM05D000088 ORTHO05D002762 1.8e-26 122.5 96 74.0
CARHR239080 Cardamine hirsuta HOM05D000088 ORTHO05D002762 6.3e-24 114.0 96 72.9
BcaC01g01106 Brassica carinata HOM05D000088 ORTHO05D002762 1.8e-23 112.5 94 74.5
Cpa.g.sc148.11 Carica papaya HOM05D000088 ORTHO05D002762 1.6e-22 109.4 98 67.3
Gohir.A07G001100 Gossypium hirsutum HOM05D000088 ORTHO05D002762 1.6e-22 109.4 98 66.3
Gorai.001G001200 Gossypium raimondii HOM05D000088 ORTHO05D002762 1.6e-22 109.4 98 66.3
Potri.006G280000 Populus trichocarpa HOM05D000088 ORTHO05D002762 2.0e-22 109.0 98 66.3
Gohir.D07G001500 Gossypium hirsutum HOM05D000088 ORTHO05D002762 4.5e-22 107.8 98 65.3
Cpa.g.sc148.10 Carica papaya HOM05D000088 ORTHO05D002762 7.7e-22 107.1 98 67.3
Duzib187G0866 Durio zibethinus HOM05D000088 ORTHO05D002762 1.0e-21 106.7 98 65.3
Sabra06G0217100 Salix brachista HOM05D000088 ORTHO05D002762 1.0e-21 106.7 97 64.9
COL.COLO4_18644 Corchorus olitorius HOM05D000088 ORTHO05D002762 1.3e-21 106.3 98 64.3
Duzib150G1047 Durio zibethinus HOM05D000088 ORTHO05D002762 1.3e-21 106.3 98 64.3
Potri.018G001800 Populus trichocarpa HOM05D000088 ORTHO05D002762 1.7e-21 105.9 98 65.3
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.7e-21 105.9 98 65.3
TWI32G0142 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 2.2e-21 105.5 97 64.9
Thecc.09G000800 Theobroma cacao HOM05D000088 ORTHO05D002762 2.9e-21 105.1 98 64.3
TWI63G0358 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 2.9e-21 105.1 97 66.0
Ciclev10008432m.g Citrus clementina HOM05D000088 ORTHO05D002762 5.0e-21 104.4 98 65.3
Gohir.A05G066500 Gossypium hirsutum HOM05D000088 ORTHO05D002762 5.0e-21 104.4 98 64.3
Gorai.009G069900 Gossypium raimondii HOM05D000088 ORTHO05D002762 5.0e-21 104.4 98 64.3
Duzib168G2132 Durio zibethinus HOM05D000088 ORTHO05D002762 6.5e-21 104.0 98 63.3
Potri.018G001900 Populus trichocarpa HOM05D000088 ORTHO05D002762 6.5e-21 104.0 98 63.3
TWI34G1420 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 8.5e-21 103.6 97 64.9
Gohir.D05G069000 Gossypium hirsutum HOM05D000088 ORTHO05D002762 1.1e-20 103.2 98 63.3
Potri.006G279900 Populus trichocarpa HOM05D000088 ORTHO05D002762 2.7e-19 98.6 98 59.2
Atru.chr7.2705 Acer truncatum HOM05D000088 ORTHO05D002762 2.3e-18 95.5 99 60.6
Aqoxy7G02660 Aquilegia oxysepala HOM05D000088 ORTHO05D002762 6.8e-18 94.0 100 55.0
Sabra06G0217000 Salix brachista HOM05D000088 ORTHO05D002762 3.4e-17 91.7 98 56.1
Nn5g26971 Nelumbo nucifera HOM05D000088 ORTHO05D002762 6.3e-16 87.4 100 55.0
TAR636G3657 Trochodendron aralioides HOM05D000088 ORTHO05D002762 6.3e-16 87.4 99 50.5
Nn8g41227 Nelumbo nucifera HOM05D000088 ORTHO05D002762 1.8e-15 85.9 100 54.0
MBI16_g00830_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002762 2.7e-14 82.0 98 55.1
TAR383G0951 Trochodendron aralioides HOM05D000088 ORTHO05D002762 5.9e-14 80.9 99 50.5
PSO017G6096 Papaver somniferum HOM05D000088 ORTHO05D002762 1.7e-13 79.3 104 51.0
PSO170G2964 Papaver somniferum HOM05D000088 ORTHO05D002762 1.7e-13 79.3 104 51.0
Oeu031064.1 Olea europaea HOM05D000088 ORTHO05D002762 2.3e-13 79.0 102 52.9
TAR626G0151 Trochodendron aralioides HOM05D000088 ORTHO05D002762 2.9e-13 78.6 100 50.0
TAR626G1814 Trochodendron aralioides HOM05D000088 ORTHO05D002762 2.9e-13 78.6 100 50.0
CDE07G1656 Ceratophyllum demersum HOM05D000088 ORTHO05D002762 1.1e-12 76.6 99 50.5
Oeu036960.1 Olea europaea HOM05D000088 ORTHO05D002762 4.2e-12 74.7 101 51.5
Ca_17444_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002762 1.2e-11 73.2 99 47.5
Ca_30019_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002762 1.2e-11 73.2 99 47.5
Os08g0224100 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002762 1.2e-11 73.2 101 53.5
SGA_v2.0_scaffold296G47575 Striga asiatica HOM05D000088 ORTHO05D002762 1.6e-11 72.8 85 51.8
Lj4g0011870 Lotus japonicus HOM05D000088 ORTHO05D002762 2.1e-11 72.4 97 47.4
THA.LOC104803583 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 2.1e-11 72.4 95 50.5
Dinv26489 Davidia involucrata HOM05D000088 ORTHO05D002762 2.8e-11 72.0 97 52.6
MSTRG.10475 Avicennia marina HOM05D000088 ORTHO05D002762 3.6e-11 71.6 87 51.7
MSTRG.26512 Avicennia marina HOM05D000088 ORTHO05D002762 3.6e-11 71.6 85 49.4
Cc06_g23750 Coffea canephora HOM05D000088 ORTHO05D002762 3.6e-11 71.6 89 49.4
SGA_v2.0_scaffold21G09595 Striga asiatica HOM05D000088 ORTHO05D002762 3.6e-11 71.6 93 46.2
vmacro22297 Vaccinium macrocarpon HOM05D000088 ORTHO05D002762 3.6e-11 71.6 97 50.5
Lalb_Chr16g0390841 Lupinus albus HOM05D000088 ORTHO05D002762 4.7e-11 71.2 100 49.0
Oeu021244.1 Olea europaea HOM05D000088 ORTHO05D002762 4.7e-11 71.2 86 51.2
Dinv12624 Davidia involucrata HOM05D000088 ORTHO05D002762 6.1e-11 70.9 97 51.5
Rhsim03G0270000 Rhododendron simsii HOM05D000088 ORTHO05D002762 8.0e-11 70.5 97 49.5
arahy.Tifrunner.gnm1.ann1.0BXA8A Arachis hypogaea HOM05D000088 ORTHO05D002762 1.0e-10 70.1 99 51.5
arahy.Tifrunner.gnm1.ann1.A1WLL6 Arachis hypogaea HOM05D000088 ORTHO05D002762 1.0e-10 70.1 99 51.5
arahy.Tifrunner.gnm1.ann1.KX010W Arachis hypogaea HOM05D000088 ORTHO05D002762 1.0e-10 70.1 99 51.5
arahy.Tifrunner.gnm1.ann1.Y5S0RG Arachis hypogaea HOM05D000088 ORTHO05D002762 1.0e-10 70.1 99 51.5
Lj5C797T8 Lonicera japonica HOM05D000088 ORTHO05D002762 1.0e-10 70.1 101 45.5
Lalb_Chr09g0332021 Lupinus albus HOM05D000088 ORTHO05D002762 1.4e-10 69.7 96 49.0
Haze_21255 Corylus avellana HOM05D000088 ORTHO05D002762 1.8e-10 69.3 101 47.5
DCAR_020451 Daucus carota HOM05D000088 ORTHO05D002762 2.3e-10 68.9 90 50.0
Glyma.05G220200 Glycine max HOM05D000088 ORTHO05D002762 2.3e-10 68.9 101 46.5
Glyma.08G026500 Glycine max HOM05D000088 ORTHO05D002762 2.3e-10 68.9 101 46.5
Phvul.002G301900 Phaseolus vulgaris HOM05D000088 ORTHO05D002762 2.3e-10 68.9 101 46.5
TPR.G25482 Trifolium pratense HOM05D000088 ORTHO05D002762 2.3e-10 68.9 99 45.5
VMungo0251G2216 Vigna mungo HOM05D000088 ORTHO05D002762 2.3e-10 68.9 101 46.5
Psat7g022040 Pisum sativum HOM05D000088 ORTHO05D002762 3.0e-10 68.6 100 50.0
SalBow6G4148 Salvia bowleyana HOM05D000088 ORTHO05D002762 3.0e-10 68.6 86 51.2
HanXRQChr05g0138981 Helianthus annuus HOM05D000088 ORTHO05D002762 4.0e-10 68.2 93 46.2
Nitab4.5_0000019g0020 Nicotiana tabacum HOM05D000088 ORTHO05D002762 4.0e-10 68.2 100 44.0
SalBow6G0982 Salvia bowleyana HOM05D000088 ORTHO05D002762 4.0e-10 68.2 86 48.8
ECA236G3318 Erigeron canadensis HOM05D000088 ORTHO05D002762 5.2e-10 67.8 101 43.6
Medtr8g100085 Medicago truncatula HOM05D000088 ORTHO05D002762 5.2e-10 67.8 99 44.4
Solyc07g042680.3 Solanum lycopersicum HOM05D000088 ORTHO05D002762 6.8e-10 67.4 100 44.0
Sopen07g022370 Solanum pennellii HOM05D000088 ORTHO05D002762 6.8e-10 67.4 100 44.0
CAN.G57.26 Capsicum annuum HOM05D000088 ORTHO05D002762 8.8e-10 67.0 100 43.0
Eucgr.C00057 Eucalyptus grandis HOM05D000088 ORTHO05D002762 8.8e-10 67.0 94 48.9
Peaxi162Scf00474g00312 Petunia axillaris HOM05D000088 ORTHO05D002762 8.8e-10 67.0 100 43.0
QL11p007210 Quercus lobata HOM05D000088 ORTHO05D002762 1.5e-09 66.2 101 46.5
Actinidia02549 Actinidia chinensis HOM05D000088 ORTHO05D002762 2.0e-09 65.9 96 45.8
Thhalv10000160m.g Eutrema salsugineum HOM05D000088 ORTHO05D002762 2.0e-09 65.9 95 48.4
Sc23g0004560 Simmondsia chinensis HOM05D000088 ORTHO05D002762 2.0e-09 65.9 100 49.0
MSTRG.19406 Avicennia marina HOM05D000088 ORTHO05D002762 2.6e-09 65.5 74 51.4
CAN.G57.18 Capsicum annuum HOM05D000088 ORTHO05D002762 2.6e-09 65.5 100 43.0
Ciclev10009018m.g Citrus clementina HOM05D000088 ORTHO05D002762 2.6e-09 65.5 97 45.4
Migut.J00853 Erythranthe guttata HOM05D000088 ORTHO05D002762 2.6e-09 65.5 86 50.0
Eucgr.C00056 Eucalyptus grandis HOM05D000088 ORTHO05D002762 2.6e-09 65.5 97 45.4
CiPaw.15G162800 Carya illinoinensis HOM05D000088 ORTHO05D002762 3.4e-09 65.1 101 46.5
Nitab4.5_0007205g0020 Nicotiana tabacum HOM05D000088 ORTHO05D002762 3.4e-09 65.1 100 43.0
PSO063G0501 Papaver somniferum HOM05D000088 ORTHO05D002762 3.4e-09 65.1 102 42.2
QL11p007266 Quercus lobata HOM05D000088 ORTHO05D002762 4.4e-09 64.7 101 45.5
HPP92_021900 Vanilla planifolia HOM05D000088 ORTHO05D002762 4.4e-09 64.7 94 46.8
Zm00001eb071280 Zea mays HOM05D000088 ORTHO05D002762 4.4e-09 64.7 99 46.5
PSO170G5580 Papaver somniferum HOM05D000088 ORTHO05D002762 5.7e-09 64.3 102 41.2
Zm00001eb430600 Zea mays HOM05D000088 ORTHO05D002762 5.7e-09 64.3 99 46.5
Haze_19078 Corylus avellana HOM05D000088 ORTHO05D002762 7.5e-09 63.9 101 47.5
Haze_19079 Corylus avellana HOM05D000088 ORTHO05D002762 7.5e-09 63.9 101 47.5
Sc09g0007510 Simmondsia chinensis HOM05D000088 ORTHO05D002762 7.5e-09 63.9 90 47.8
Lalb_Chr05g0223841 Lupinus albus HOM05D000088 ORTHO05D002762 9.8e-09 63.5 89 47.2
Solyc07g042890.3 Solanum lycopersicum HOM05D000088 ORTHO05D002762 9.8e-09 63.5 100 42.0
Sopen07g022490 Solanum pennellii HOM05D000088 ORTHO05D002762 9.8e-09 63.5 100 42.0
Zm00001eb171020 Zea mays HOM05D000088 ORTHO05D002762 1.3e-08 63.2 107 47.7
CSS0022877 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002762 2.2e-08 62.4 88 47.7
DCAR_009051 Daucus carota HOM05D000088 ORTHO05D002762 2.2e-08 62.4 97 46.4
Zm00001eb414020 Zea mays HOM05D000088 ORTHO05D002762 2.2e-08 62.4 107 46.7
HanXRQChr09g0261971 Helianthus annuus HOM05D000088 ORTHO05D002762 2.8e-08 62.0 94 43.6
Prupe.1G001200 Prunus persica HOM05D000088 ORTHO05D002762 2.8e-08 62.0 102 47.1
Atru.chr7.998 Acer truncatum HOM05D000088 ORTHO05D002762 3.7e-08 61.6 86 46.5
CANSAT80G0781 Cannabis sativa HOM05D000088 ORTHO05D002762 3.7e-08 61.6 103 44.7
Lj2g0016943 Lotus japonicus HOM05D000088 ORTHO05D002762 3.7e-08 61.6 98 49.0
Os04g0608900 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002762 3.7e-08 61.6 107 43.0
Phvul.004G178600 Phaseolus vulgaris HOM05D000088 ORTHO05D002762 3.7e-08 61.6 91 46.2
TAR626G1565 Trochodendron aralioides HOM05D000088 ORTHO05D002762 4.9e-08 61.2 96 44.8
HPP92_018499 Vanilla planifolia HOM05D000088 ORTHO05D002762 6.3e-08 60.8 96 43.8
ECA234G4230 Erigeron canadensis HOM05D000088 ORTHO05D002762 8.3e-08 60.5 79 48.1
HanXRQChr10g0309451 Helianthus annuus HOM05D000088 ORTHO05D002762 8.3e-08 60.5 79 48.1
Manes.01G125400 Manihot esculenta HOM05D000088 ORTHO05D002762 8.3e-08 60.5 100 44.0
VMungo0464G1675 Vigna mungo HOM05D000088 ORTHO05D002762 8.3e-08 60.5 101 44.6
Ah.10g032840 Amaranthus hybridus HOM05D001475 ORTHO05D001525 1.1e-07 60.1 92 45.7
CiPaw.16G105700 Carya illinoinensis HOM05D000088 ORTHO05D002762 1.1e-07 60.1 101 45.5
Lsat_1_v5_gn_5_81101 Lactuca sativa HOM05D000088 ORTHO05D002762 1.4e-07 59.7 87 43.7
Prupe.1G001300 Prunus persica HOM05D000088 ORTHO05D002762 1.4e-07 59.7 102 46.1
Aa31sc132G100 Aethionema arabicum HOM05D000088 ORTHO05D002762 1.8e-07 59.3 96 47.9
Ah.11g043550 Amaranthus hybridus HOM05D000088 ORTHO05D002762 1.8e-07 59.3 93 43.0
MD00G1091600 Malus domestica HOM05D000088 ORTHO05D002762 1.8e-07 59.3 102 48.0
EL10Ac2g03614 Beta vulgaris HOM05D000088 ORTHO05D002762 3.1e-07 58.5 89 48.3
Lsat_1_v5_gn_8_70041 Lactuca sativa HOM05D000088 ORTHO05D002762 3.1e-07 58.5 88 42.0
CSS0039565 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002762 4.1e-07 58.2 96 46.9
MD04G1001300 Malus domestica HOM05D000088 ORTHO05D002762 4.1e-07 58.2 102 46.1
Rhsim01G0106600 Rhododendron simsii HOM05D000088 ORTHO05D002762 5.4e-07 57.8 97 44.3
Hund03217 Selenicereus undatus HOM05D000088 ORTHO05D002762 9.2e-07 57.0 68 52.9
CDE04G2915 Ceratophyllum demersum HOM05D000088 ORTHO05D002762 1.2e-06 56.6 57 57.9
RcHm_v2.0_Chr4g0384771 Rosa chinensis HOM05D000088 ORTHO05D002762 1.2e-06 56.6 101 45.5
HanXRQChr12g0358531 Helianthus annuus HOM05D000088 ORTHO05D002762 1.6e-06 56.2 79 45.6
MD13G1286000 Malus domestica HOM05D000088 ORTHO05D002762 2.7e-06 55.5 102 45.1
Nitab4.5_0000073g0460 Nicotiana tabacum HOM05D000088 ORTHO05D002762 2.7e-06 55.5 100 41.0
ClCG11G011180 Citrullus lanatus HOM05D000088 ORTHO05D002762 3.5e-06 55.1 85 45.9
Lsat_1_v5_gn_2_113820 Lactuca sativa HOM05D000088 ORTHO05D002762 3.5e-06 55.1 75 45.3
MD04G1001200 Malus domestica HOM05D000088 ORTHO05D002762 4.5e-06 54.7 102 45.1
CAN.G218.5 Capsicum annuum HOM05D000088 ORTHO05D002762 5.9e-06 54.3 94 41.5
MELO3C003908.2 Cucumis melo HOM05D000088 ORTHO05D002762 5.9e-06 54.3 85 45.9
CsaV3_2G009250 Cucumis sativus L. HOM05D000088 ORTHO05D002762 5.9e-06 54.3 85 45.9
FvH4_4g00150 Fragaria vesca HOM05D000088 ORTHO05D002762 7.8e-06 53.9 97 42.3
FAN22G0919 Fragaria x ananassa HOM05D000088 ORTHO05D002762 7.8e-06 53.9 97 42.3


User provided reference genes

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