Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 7.5e-83 310.5 155 100.0
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 5.2e-52 208.0 102 99.0
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 1.0e-47 193.7 101 93.1
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 6.2e-45 184.5 91 97.8
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 2.9e-42 175.6 90 92.2
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 5.1e-39 164.9 90 87.8
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 6.6e-39 164.5 86 90.7
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 8.4e-34 147.5 72 97.2
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 7.9e-32 141.0 72 94.4
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 7.1e-25 117.9 75 74.7
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 9.3e-25 117.5 75 73.3
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 9.3e-25 117.5 57 96.5
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 9.3e-25 117.5 75 73.3
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 9.3e-25 117.5 75 73.3
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 9.3e-25 117.5 75 73.3
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 9.3e-25 117.5 75 73.3
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 7.9e-24 114.4 72 72.2
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.0e-23 114.0 92 56.5
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.3e-23 113.6 75 70.7
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.8e-23 113.2 75 70.7
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 2.3e-23 112.8 75 69.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.3e-23 112.8 75 69.3
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 3.0e-23 112.5 91 61.5
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 3.0e-23 112.5 75 69.3
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 3.0e-23 112.5 75 69.3
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 3.0e-23 112.5 75 69.3
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 3.0e-23 112.5 75 68.0
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 3.0e-23 112.5 75 69.3
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 3.9e-23 112.1 88 63.6
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.9e-23 112.1 75 68.0
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.9e-23 112.1 75 68.0
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 3.9e-23 112.1 75 68.0
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 3.9e-23 112.1 73 69.9
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 3.9e-23 112.1 75 70.7
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 3.9e-23 112.1 75 69.3
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.9e-23 112.1 86 65.1
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.1e-23 111.7 75 66.7
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 5.1e-23 111.7 75 70.7
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 66.7
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 68.0
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 66.7
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 66.7
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 68.0
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 6.7e-23 111.3 75 66.7
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 8.7e-23 110.9 75 68.0
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 8.7e-23 110.9 75 66.7
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 8.7e-23 110.9 73 68.5
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 8.7e-23 110.9 75 68.0
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 8.7e-23 110.9 75 68.0
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 8.7e-23 110.9 75 68.0
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 66.7
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 69.3
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 1.1e-22 110.5 101 51.5
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.1e-22 110.5 75 68.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 68.0
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 68.0
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 66.7
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 65.3
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.5e-22 110.2 75 66.7
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.9e-22 109.8 75 65.3
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.9e-22 109.8 75 65.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.9e-22 109.8 75 65.3
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 1.9e-22 109.8 75 66.7
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 69.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 65.3
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 65.3
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 2.5e-22 109.4 91 60.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 66.7
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 2.5e-22 109.4 72 68.1
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 65.3
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.5e-22 109.4 75 65.3
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 3.3e-22 109.0 75 64.0
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.3e-22 109.0 75 69.3
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 3.3e-22 109.0 75 69.3
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 3.3e-22 109.0 75 65.3
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 3.3e-22 109.0 75 65.3
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 4.3e-22 108.6 75 64.0
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 4.3e-22 108.6 75 65.3
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.3e-22 108.6 75 62.7
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 4.3e-22 108.6 75 65.3
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 4.3e-22 108.6 75 65.3
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 5.7e-22 108.2 75 65.3
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 5.7e-22 108.2 75 64.0
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.7e-22 108.2 75 64.0
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 5.7e-22 108.2 75 64.0
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 5.7e-22 108.2 75 65.3
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 66.7
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 68.0
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 66.7
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 65.3
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 65.3
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 7.4e-22 107.8 75 65.3
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 9.6e-22 107.5 75 65.3
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 9.6e-22 107.5 75 64.0
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 9.6e-22 107.5 75 65.3
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 9.6e-22 107.5 75 64.0
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 9.6e-22 107.5 92 60.9
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.3e-21 107.1 75 64.0
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.3e-21 107.1 75 66.7
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.3e-21 107.1 72 72.2
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.6e-21 106.7 84 60.7
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 65.3
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 64.0
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 64.0
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 64.0
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 64.0
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 1.6e-21 106.7 75 62.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 64.0
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 64.0
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 65.3
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 64.0
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 65.3
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 65.3
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 2.1e-21 106.3 75 65.3
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.8e-21 105.9 66 71.2
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.8e-21 105.9 75 62.7
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 2.8e-21 105.9 75 65.3
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 2.8e-21 105.9 75 62.7
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.7e-21 105.5 75 65.3
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.7e-21 105.5 75 65.3
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.7e-21 105.5 75 65.3
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 6.2e-21 104.8 75 61.3
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 6.2e-21 104.8 75 65.3
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 6.2e-21 104.8 75 62.7
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.1e-20 104.0 75 61.3
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.1e-20 104.0 75 61.3
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 2.4e-20 102.8 75 61.3
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 4.0e-20 102.1 75 60.0
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 1.5e-19 100.1 75 60.0
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 1.5e-19 100.1 75 60.0
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 3.4e-19 99.0 75 61.3
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.0e-18 97.4 75 57.3
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 5.5e-17 91.7 59 69.5
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.2e-16 90.5 75 57.3
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 1.3e-15 87.0 75 56.0
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 6.7e-15 84.7 72 54.2
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.9e-14 83.2 86 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 4.1e-12 75.5 75 48.0
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.2e-11 73.9 75 46.7
C04p61090 Brassica napus HOM05D038349 ORTHO05D014526 3.4e-11 72.4 75 52.0
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 3.2e-09 65.9 29 86.2
C03p89980 Brassica napus HOM05D038349 ORTHO05D014526 3.2e-09 65.9 75 49.3
BcaC01g05019 Brassica carinata HOM05D019496 ORTHO05D019976 2.5e-06 56.2 42 52.4


User provided reference genes

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