Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 2.7e-240 835.1 470 100.0
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 4.4e-235 817.8 492 94.5
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 1.8e-233 812.4 492 94.1
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 2.6e-219 765.4 490 87.1
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 2.6e-219 765.4 498 86.7
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 6.0e-216 754.2 499 84.6
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.5e-190 669.8 502 76.5
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 1.8e-180 636.3 508 73.4
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 2.9e-178 629.0 508 71.5
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 5.1e-175 618.2 504 70.2
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 2.5e-174 615.9 502 71.5
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 3.8e-170 602.1 498 70.9
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 1.0e-162 577.4 509 68.4
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 2.2e-149 533.1 520 65.6
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 6.1e-144 515.0 502 58.8
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 8.8e-143 511.1 500 58.6
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 1.9e-137 493.4 498 57.4
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 1.9e-137 493.4 499 55.3
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 7.2e-137 491.5 512 55.3
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 9.4e-137 491.1 499 56.1
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 2.1e-136 490.0 489 55.6
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 2.7e-136 489.6 498 56.8
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 3.6e-136 489.2 496 57.1
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 1.4e-135 487.3 497 56.1
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.8e-135 486.9 498 57.0
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 2.3e-135 486.5 500 56.0
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 3.9e-135 485.7 504 58.1
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 3.9e-135 485.7 504 56.3
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 3.9e-135 485.7 499 56.1
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 2.6e-134 483.0 512 56.1
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 1.7e-133 480.3 501 56.1
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 1.7e-133 480.3 496 57.3
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 2.8e-133 479.6 503 56.5
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 4.8e-133 478.8 502 56.2
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 6.3e-133 478.4 504 57.7
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 6.3e-133 478.4 501 56.5
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 5.9e-131 471.9 499 56.7
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 1.0e-130 471.1 496 54.4
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 1.3e-130 470.7 495 55.8
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 1.7e-130 470.3 494 53.4
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.7e-130 470.3 515 56.3
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.9e-130 469.5 506 57.1
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 5.0e-130 468.8 500 55.0
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 1.9e-129 466.8 501 54.3
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.9e-129 466.8 501 55.7
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 3.2e-129 466.1 498 53.8
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 5.5e-129 465.3 500 55.0
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 7.2e-129 464.9 500 54.0
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 9.4e-129 464.5 503 55.9
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 9.4e-129 464.5 504 54.2
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 2.1e-128 463.4 501 52.1
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 4.7e-128 462.2 499 54.3
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 4.7e-128 462.2 499 54.3
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 8.0e-128 461.5 507 54.4
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.0e-127 461.1 496 53.0
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.0e-127 461.1 503 55.9
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 1.0e-127 461.1 500 55.0
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.4e-127 460.7 503 55.9
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 1.2e-126 457.6 499 54.1
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 1.5e-126 457.2 501 54.7
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 1.5e-126 457.2 501 54.3
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 2.0e-126 456.8 498 52.2
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 4.4e-126 455.7 510 52.9
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 5.7e-126 455.3 509 51.5
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 5.7e-126 455.3 501 55.3
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 7.5e-126 454.9 499 54.1
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 1.3e-125 454.1 501 53.9
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 3.7e-125 452.6 501 52.7
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 4.8e-125 452.2 520 49.6
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 1.4e-124 450.7 475 53.7
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 5.3e-124 448.7 501 52.9
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 7.0e-124 448.4 501 53.5
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 3.5e-123 446.0 500 53.4
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 5.9e-123 445.3 498 54.8
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 7.7e-123 444.9 501 54.5
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 4.2e-121 439.1 509 49.7
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 3.6e-120 436.0 519 50.5
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 3.6e-120 436.0 517 54.2
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.8e-119 433.7 520 51.0
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 7.5e-118 428.3 501 50.3
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 9.8e-118 427.9 501 51.5
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 9.1e-116 421.4 524 49.2
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 1.6e-115 420.6 550 47.1
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 4.5e-115 419.1 507 49.3
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 2.8e-112 409.8 510 49.0
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.4e-108 397.5 538 47.8
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.4e-108 396.7 502 50.8
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 9.2e-108 394.8 524 46.9
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 1.6e-107 394.0 401 54.6
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 1.5e-102 377.5 352 56.0
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.6e-102 376.7 499 48.1
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 1.1e-97 361.3 514 44.9
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 2.1e-91 340.5 494 46.2
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 3.5e-91 339.7 366 57.7
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 5.6e-89 332.4 524 40.5
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 9.5e-89 331.6 520 39.8
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 1.4e-87 327.8 361 57.6
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 2.2e-85 320.5 495 43.8
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.2e-78 298.1 334 54.8
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 2.7e-67 260.4 580 35.5
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 9.6e-57 225.3 356 47.2
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.6e-56 224.6 189 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 2.7e-51 207.2 368 43.2
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 8.2e-48 195.7 565 34.3
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 1.8e-31 141.4 146 52.1
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 1.0e-29 135.6 186 44.6
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 7.4e-25 119.4 342 32.7
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 3.6e-19 100.5 106 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.4e-18 98.6 148 41.2
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 5.0e-13 80.1 334 27.8
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.4e-07 62.0 55 52.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 9.1e-07 59.3 63 47.6
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 9.1e-07 59.3 250 26.8
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 9.1e-07 59.3 75 42.7
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 9.1e-07 59.3 49 57.1
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.2e-06 58.9 63 47.6
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.2e-06 58.9 59 49.2
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 2.7e-06 57.8 73 42.5
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.7e-06 57.8 56 48.2
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 3.5e-06 57.4 73 43.8
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 4.5e-06 57.0 56 46.4
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 4.5e-06 57.0 55 49.1
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 5.9e-06 56.6 56 46.4
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 5.9e-06 56.6 63 42.9
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 5.9e-06 56.6 53 52.8
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 5.9e-06 56.6 71 40.8


User provided reference genes

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