Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 2.5e-75 285.4 153 100.0
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 2.5e-75 285.4 153 100.0
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 3.7e-74 281.6 143 100.0
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 1.2e-69 266.5 147 93.9
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 1.2e-69 266.5 147 93.9
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 1.2e-69 266.5 147 93.9
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 7.4e-67 257.3 146 91.1
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 1.8e-65 252.7 145 89.7
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 2.5e-62 242.3 146 85.6
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 7.2e-62 240.7 146 85.6
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 1.4e-60 236.5 146 83.6
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 5.2e-60 234.6 146 83.6
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 5.5e-54 214.5 123 88.6
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 5.7e-51 204.5 146 71.2
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 1.0e-44 183.7 155 60.6
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 1.4e-44 183.3 147 62.6
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 4.0e-44 181.8 147 61.9
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 2.0e-43 179.5 146 61.6
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 3.4e-43 178.7 147 61.2
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 9.8e-43 177.2 147 59.9
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 2.2e-42 176.0 147 60.5
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 3.7e-42 175.3 147 60.5
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 3.7e-42 175.3 146 61.0
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 8.3e-42 174.1 155 56.1
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 8.3e-42 174.1 147 61.2
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 1.1e-41 173.7 157 58.0
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 1.8e-41 172.9 147 59.9
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 1.8e-41 172.9 146 59.6
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 1.8e-41 172.9 154 56.5
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 2.4e-41 172.6 147 58.5
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 4.1e-41 171.8 146 59.6
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 4.1e-41 171.8 146 57.5
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 7.0e-41 171.0 147 59.9
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 9.2e-41 170.6 147 56.5
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 9.2e-41 170.6 143 58.0
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 9.2e-41 170.6 146 56.8
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 1.2e-40 170.2 152 55.9
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 1.2e-40 170.2 147 59.2
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 5.9e-40 167.9 152 55.3
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 1.0e-39 167.2 109 78.9
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 1.7e-39 166.4 142 58.5
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.7e-39 166.4 148 57.4
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 3.8e-39 165.2 155 55.5
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 3.8e-39 165.2 143 55.9
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 5.0e-39 164.9 147 56.5
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 8.6e-39 164.1 147 55.1
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 1.1e-38 163.7 142 55.6
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 1.1e-38 163.7 146 56.8
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 1.5e-38 163.3 147 57.8
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 1.5e-38 163.3 156 53.8
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 2.5e-38 162.5 147 55.8
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 3.3e-38 162.2 145 55.9
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 7.3e-38 161.0 148 55.4
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 7.3e-38 161.0 155 52.9
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 7.3e-38 161.0 155 52.9
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 9.5e-38 160.6 151 52.3
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 9.5e-38 160.6 145 55.2
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 1.2e-37 160.2 155 52.9
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 1.6e-37 159.8 142 56.3
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 2.1e-37 159.5 147 53.7
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 2.1e-37 159.5 146 54.8
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 3.6e-37 158.7 146 54.8
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 3.6e-37 158.7 147 54.4
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 8.0e-37 157.5 164 50.0
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 8.0e-37 157.5 146 53.4
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 1.0e-36 157.1 145 53.1
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 1.0e-36 157.1 121 63.6
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 1.8e-36 156.4 144 55.6
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 1.8e-36 156.4 146 54.8
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 3.0e-36 155.6 147 50.3
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 5.2e-36 154.8 146 55.5
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 5.2e-36 154.8 146 52.7
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 8.9e-36 154.1 143 55.9
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 5.7e-35 151.4 180 49.4
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 7.5e-35 151.0 146 51.4
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 1.7e-34 149.8 121 61.2
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 2.2e-34 149.4 122 59.0
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 4.9e-34 148.3 149 54.4
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 6.4e-34 147.9 145 51.0
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 1.4e-33 146.7 168 47.6
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 3.2e-33 145.6 120 59.2
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 1.2e-32 143.7 123 56.1
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 1.2e-32 143.7 120 58.3
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 2.7e-32 142.5 145 52.4
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 7.8e-32 141.0 178 46.1
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 8.6e-31 137.5 121 57.0
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 1.1e-30 137.1 119 55.5
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 2.1e-29 132.9 116 53.4
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 5.2e-28 128.3 130 49.2
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 1.5e-27 126.7 109 56.9
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 2.0e-27 126.3 109 55.0
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 3.4e-27 125.6 109 56.0
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 8.3e-26 120.9 99 56.6
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 1.2e-24 117.1 111 55.0
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 4.6e-24 115.2 92 57.6
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 6.0e-24 114.8 147 46.3
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 4.7e-21 105.1 142 42.3
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 3.1e-20 102.4 84 56.0
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 5.2e-20 101.7 148 41.2
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 6.8e-20 101.3 127 40.9
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 2.9e-18 95.9 144 37.5
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 6.4e-18 94.7 143 37.1
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 1.9e-17 93.2 69 62.3
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 9.2e-17 90.9 67 59.7
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 3.5e-16 89.0 80 58.8
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 6.0e-16 88.2 68 60.3
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 1.0e-15 87.4 142 35.2
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 1.7e-15 86.7 76 48.7
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 8.6e-15 84.3 68 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 1.6e-13 80.1 117 35.9
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.3e-12 76.3 87 48.3
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 4.0e-12 75.5 82 48.8
Cre03.g201500 Chlamydomonas reinhardtii HOM05D006886 ORTHO05D008494 1.1e-09 67.4 137 29.2
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 2.7e-08 62.8 96 38.5
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 2.3e-07 59.7 61 50.8


User provided reference genes

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