Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40877 Brassica carinata HOM05D018780 ORTHO05D001784 1.0e-63 246.9 153 100.0
BcaC07g40878 Brassica carinata HOM05D018780 ORTHO05D001784 1.0e-63 246.9 153 100.0
BraA09t40976Z Brassica rapa HOM05D018780 ORTHO05D001784 3.1e-49 198.7 158 86.7
A09p55760 Brassica napus HOM05D018780 ORTHO05D001784 2.2e-47 192.6 158 84.8
BcaB08g35169 Brassica carinata HOM05D018780 ORTHO05D001784 2.1e-45 186.0 160 68.1
C08p38750 Brassica napus HOM05D018780 ORTHO05D001784 1.7e-39 166.4 109 100.0
BolC8t51445H Brassica oleracea HOM05D018780 ORTHO05D001784 1.7e-39 166.4 109 100.0
Sp4g04350 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.0e-28 130.6 179 65.9
CARHR116380 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.6e-27 125.9 172 50.0
AT2G25250 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.7e-26 123.2 165 49.7
Thhalv10000356m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 9.2e-25 117.5 172 51.2
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.7e-21 105.1 190 42.6
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 6.2e-21 104.8 183 43.2
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 1.4e-20 103.6 183 44.3
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.2e-19 100.5 189 44.4
Carub.0004s0487 Capsella rubella HOM05D001921 ORTHO05D001784 1.5e-19 100.1 82 72.0
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.5e-19 100.1 163 45.4
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 2.6e-19 99.4 186 45.7
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 3.4e-19 99.0 198 47.5
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 7.5e-19 97.8 208 39.4
AL4G16560 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.7e-18 95.5 102 60.8
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 4.9e-18 95.1 182 41.8
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 6.4e-18 94.7 183 42.6
THA.LOC104818602 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.4e-17 93.6 190 51.6
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 1.3e-15 87.0 193 40.9
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 5.1e-15 85.1 182 37.9
AT4G32020 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 6.6e-15 84.7 191 40.8
BcaNung03129 Brassica carinata HOM05D001921 ORTHO05D001784 1.1e-14 84.0 160 39.4
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 9.5e-14 80.9 181 36.5
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 9.5e-14 80.9 199 46.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 2.1e-13 79.7 179 36.9
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 6.2e-13 78.2 185 34.1
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 1.1e-12 77.4 198 34.3
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.1e-12 77.4 177 36.7
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.1e-12 77.4 177 36.7
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.1e-12 75.9 177 36.2
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 5.2e-12 75.1 180 35.6
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 6.8e-12 74.7 181 35.4
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.2e-10 69.7 186 34.9
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.8e-10 68.9 90 46.7
C01p06910 Brassica napus HOM05D001921 ORTHO05D001784 8.4e-10 67.8 211 32.2
BraA01t00594Z Brassica rapa HOM05D001921 ORTHO05D001784 1.1e-09 67.4 77 50.6
BcaC09g51990 Brassica carinata HOM05D001921 ORTHO05D001784 1.4e-09 67.0 77 50.6
BolC1t00688H Brassica oleracea HOM05D001921 ORTHO05D001784 1.4e-09 67.0 77 50.6
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 1.4e-09 67.0 182 30.2
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.4e-09 67.0 166 38.0
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.9e-09 66.6 77 49.4
Aa31LG2G18040 Aethionema arabicum HOM05D001921 ORTHO05D001784 5.4e-09 65.1 189 40.2
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.2e-08 63.9 181 35.4
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-08 63.5 181 34.3
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 2.1e-08 63.2 194 32.0
Eucgr.C02723 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.0e-07 60.8 183 41.5
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.7e-07 60.1 181 33.7
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 3.0e-07 59.3 169 35.5
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 3.0e-07 59.3 84 40.5
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 3.9e-07 58.9 156 34.0
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 6.6e-07 58.2 192 32.3
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 1.1e-06 57.4 179 30.7
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 1.1e-06 57.4 181 30.4
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.3e-06 55.8 182 39.6
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.6e-06 55.1 74 45.9
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 9.6e-06 54.3 165 32.7


User provided reference genes

Program Settings