Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.3e-109 399.8 209 100.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.2e-107 393.3 215 97.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 4.5e-107 391.3 215 96.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-106 389.0 209 96.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 5.0e-106 387.9 209 96.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 8.0e-104 380.6 209 94.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.1e-100 368.2 209 91.4
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-98 363.6 209 88.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.2e-98 362.5 207 89.4
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.0e-98 361.3 209 88.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.0e-95 351.7 211 89.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 5.2e-95 351.3 203 88.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 3.2e-89 332.0 204 79.4
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 9.4e-89 330.5 204 80.4
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.6e-88 329.7 204 80.4
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 8.0e-88 327.4 208 78.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.8e-87 326.2 205 81.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.0e-86 322.8 207 81.6
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.4e-86 322.0 204 80.4
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.8e-86 320.5 205 80.5
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.2e-85 319.3 207 79.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-84 316.6 209 79.4
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.4e-78 295.4 183 81.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.8e-77 292.4 207 74.9
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.4e-76 290.0 172 81.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 9.2e-76 287.3 210 72.4
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.9e-75 284.6 210 71.9
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.8e-75 284.3 210 71.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.8e-75 284.3 211 71.1
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.3e-74 283.5 211 71.1
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 7.3e-73 277.7 206 71.8
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.5e-73 277.3 212 69.3
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.2e-72 276.9 205 69.3
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.6e-72 276.6 210 69.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.8e-72 275.8 209 70.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.7e-72 275.0 204 71.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 6.1e-72 274.6 203 70.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.0e-71 273.9 206 71.4
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.4e-71 273.5 201 72.1
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.3e-71 272.7 204 70.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.1e-71 272.3 206 68.9
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 4.0e-71 271.9 208 70.2
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 5.2e-71 271.6 205 69.8
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.9e-71 270.8 204 69.1
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 8.9e-71 270.8 202 69.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.2e-70 270.4 212 68.4
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.2e-70 270.4 210 70.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.2e-70 270.4 203 69.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.5e-70 270.0 210 67.6
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.0e-70 269.6 205 67.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.4e-70 268.5 200 70.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 4.4e-70 268.5 195 69.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.4e-70 268.5 205 69.3
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 4.4e-70 268.5 213 67.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 4.4e-70 268.5 200 71.5
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 4.4e-70 268.5 211 68.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.7e-69 266.5 202 69.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.2e-69 266.2 206 68.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.2e-69 266.2 226 66.4
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.9e-69 265.8 188 71.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 4.9e-69 265.0 205 69.3
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.4e-69 264.6 186 72.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.4e-69 264.6 206 67.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.3e-69 264.2 208 68.8
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 8.3e-69 264.2 194 71.1
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.1e-68 263.8 211 66.8
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-68 263.8 198 70.7
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 208 68.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.9e-68 263.1 211 67.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.4e-68 262.7 203 68.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.2e-68 262.3 208 68.3
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.4e-68 261.5 179 73.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.2e-68 260.8 198 68.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.2e-67 260.4 204 68.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.2e-67 260.4 201 68.7
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-67 260.4 228 64.9
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-67 259.2 201 69.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-67 258.8 210 67.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.5e-67 258.8 203 67.0
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.0e-66 257.3 208 66.8
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-66 256.5 201 66.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.3e-66 256.1 177 73.4
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.0e-66 255.8 213 65.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.0e-66 255.0 208 67.3
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 5.0e-66 255.0 208 65.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 8.6e-66 254.2 198 67.7
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.9e-65 253.1 198 65.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-65 252.3 201 67.2
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-65 252.3 201 67.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.3e-65 252.3 205 66.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.3e-65 251.9 208 66.3
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.3e-65 251.1 211 66.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.3e-65 251.1 208 66.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 7.3e-65 251.1 200 65.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 7.3e-65 251.1 198 63.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.2e-64 250.4 203 67.0
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.2e-64 250.4 149 82.6
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-64 250.0 208 65.9
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.1e-63 247.3 198 65.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-63 246.9 153 79.1
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.1e-63 245.7 196 65.8
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 5.2e-63 245.0 194 67.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 6.8e-63 244.6 190 66.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.9e-63 244.2 201 66.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.4e-62 242.3 193 64.8
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.3e-61 240.4 212 64.2
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.2e-61 239.6 182 66.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.9e-61 238.4 195 66.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.4e-61 238.0 182 70.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.4e-60 236.1 193 63.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 9.2e-60 234.2 199 64.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 9.2e-60 234.2 190 66.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.1e-59 233.0 289 48.1
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.7e-59 232.6 154 77.9
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.7e-59 232.6 182 68.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 5.1e-58 228.4 195 63.6
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 5.1e-58 228.4 205 60.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-57 226.5 162 72.2
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.5e-57 224.2 203 62.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.5e-57 224.2 210 61.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.1e-55 220.7 169 69.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.1e-55 219.2 167 65.9
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.9e-54 214.2 169 64.5
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.2e-52 209.1 124 81.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.0e-50 204.1 128 81.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.8e-47 193.4 175 57.7
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.8e-47 191.4 123 77.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.6e-46 189.5 150 63.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 7.6e-46 188.0 205 55.1
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.8e-45 185.7 166 59.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-43 180.3 163 63.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.6e-42 174.9 189 53.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 3.3e-41 172.6 113 73.5
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.8e-40 169.5 112 78.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.4e-38 162.2 115 71.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.2e-37 159.8 102 79.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.8e-37 159.1 149 55.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.2e-36 155.6 208 45.7
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.0e-34 151.0 86 83.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 6.6e-34 148.3 172 47.1
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.3e-33 146.0 174 47.1
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.0e-31 139.0 173 48.6
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.6e-27 127.1 99 66.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.8e-26 123.6 91 65.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.5e-25 120.6 70 75.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 5.6e-25 118.6 70 74.3
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.8e-16 89.0 153 37.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 8.2e-16 88.2 52 75.0
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.1e-15 86.3 196 32.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.3e-15 85.5 216 35.2
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.9e-15 85.1 52 75.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.2e-13 80.1 87 54.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 5.5e-12 75.5 56 69.6
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.6e-11 73.9 56 71.4
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 6.3e-08 62.0 40 77.5


User provided reference genes

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