Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.6e-160 568.2 282 100.0
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.4e-159 566.2 282 99.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.4e-159 566.2 282 99.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 4.9e-157 557.8 284 98.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 4.9e-157 557.8 284 98.6
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.7e-154 549.3 284 96.5
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 3.5e-147 525.0 285 90.9
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 5.6e-145 517.7 285 88.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 9.0e-143 510.4 286 87.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.2e-141 505.8 285 86.7
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.5e-126 456.4 294 78.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.7e-123 445.7 277 78.7
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.7e-115 419.1 257 77.8
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.4e-114 416.8 251 80.1
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.5e-113 413.3 279 73.8
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.3e-113 412.1 279 73.1
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 7.4e-113 411.0 254 79.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 7.4e-113 411.0 279 72.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 9.7e-113 410.6 250 79.2
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.3e-112 410.2 247 79.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.1e-111 405.6 243 79.4
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 5.3e-111 404.8 250 77.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.3e-111 404.8 252 77.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 4.5e-110 401.7 251 76.9
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 5.9e-110 401.4 274 70.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.0e-109 400.6 251 76.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-109 400.2 249 78.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-109 400.2 258 74.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.8e-109 398.7 255 75.3
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 5.0e-109 398.3 248 77.0
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 6.5e-109 397.9 273 71.8
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 6.5e-109 397.9 238 79.4
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.9e-108 396.4 255 74.9
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.5e-108 396.0 270 70.7
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 5.5e-108 394.8 255 74.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.2e-108 394.4 275 69.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 7.2e-108 394.4 248 76.6
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-108 394.0 253 74.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.2e-107 393.7 273 71.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 2.7e-107 392.5 260 72.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 4.7e-107 391.7 244 75.0
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 6.1e-107 391.3 270 70.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 7.9e-107 391.0 276 68.5
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.8e-106 389.8 250 73.6
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.0e-106 389.0 250 73.6
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 6.7e-106 387.9 252 71.8
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 8.8e-106 387.5 274 68.6
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.5e-105 386.7 250 72.8
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.4e-105 385.2 248 74.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 4.4e-105 385.2 255 72.2
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.3e-104 383.6 251 74.5
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.3e-104 383.6 269 69.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 2.8e-104 382.5 287 66.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.7e-104 382.1 248 73.4
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.8e-104 381.7 262 69.1
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.4e-103 380.2 258 72.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 5.3e-103 378.3 296 65.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 9.1e-103 377.5 243 75.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.2e-102 377.1 258 72.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 4.5e-102 375.2 194 93.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 5.9e-102 374.8 292 66.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.0e-101 374.0 253 73.1
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.3e-101 373.6 247 73.3
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.0e-101 371.7 241 71.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 8.5e-101 370.9 250 70.8
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.5e-100 370.2 257 71.2
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.2e-100 369.0 272 67.3
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.5e-100 368.2 265 66.8
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.5e-100 368.2 265 66.8
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 9.4e-100 367.5 245 71.8
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-100 367.5 249 71.5
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.6e-99 366.7 272 66.9
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.1e-99 366.3 195 92.3
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.1e-99 366.3 248 71.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.1e-99 364.8 280 65.4
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 8.0e-99 364.4 254 68.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.3e-98 362.8 271 66.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.2e-98 361.7 275 64.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.6e-97 359.4 252 69.8
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.4e-97 358.6 252 68.7
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.4e-97 358.6 280 64.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 8.2e-96 354.4 274 63.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 8.2e-96 354.4 261 66.3
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.1e-95 352.4 283 63.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.5e-94 348.6 250 66.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.5e-92 342.8 250 67.6
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.2e-92 342.4 239 69.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 7.2e-92 341.3 207 78.3
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.5e-86 322.0 264 60.6
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.0e-82 310.8 277 59.9
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.0e-82 310.8 203 73.4
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.0e-82 309.3 254 59.4
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.1e-79 298.9 274 56.2
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 5.4e-79 298.5 274 56.2
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.9e-78 295.0 273 56.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.0e-77 292.0 256 56.6
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 5.6e-76 288.5 255 57.3
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.6e-75 287.0 277 54.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.1e-75 286.6 279 53.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.8e-75 286.2 275 55.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.8e-75 286.2 275 52.0
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.1e-75 285.0 280 56.1
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.4e-74 283.9 280 55.7
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.0e-74 282.7 274 54.4
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.0e-74 282.7 238 60.9
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.2e-70 270.8 267 53.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.6e-70 268.9 270 53.0
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.8e-62 241.5 166 70.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.9e-56 223.0 156 68.6
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.2e-55 218.0 237 49.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-54 217.6 173 63.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 4.6e-54 215.7 306 42.2
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.0e-53 214.5 253 45.1
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.9e-48 195.7 212 49.1
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.6e-46 190.7 172 59.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.3e-45 186.8 246 42.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.1e-38 163.7 128 64.1
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.2e-35 152.1 114 64.0
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.1e-35 151.8 94 81.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-33 146.4 88 76.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-32 143.7 156 50.0
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.9e-28 130.6 76 81.6
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-26 124.8 131 51.1
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-23 114.4 96 57.3
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 8.1e-19 98.6 165 37.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-15 86.3 83 49.4
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.0e-14 82.4 44 84.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.5e-12 77.0 38 86.8
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-10 69.3 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-10 69.3 37 83.8
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.3e-08 64.7 66 48.5
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 7.2e-07 58.9 67 44.8
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-06 57.0 38 68.4


User provided reference genes

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