Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 3.3e-116 421.8 224 100.0
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 3.3e-116 421.8 224 100.0
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 3.3e-116 421.8 224 100.0
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 4.7e-110 401.4 226 96.0
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 1.0e-109 400.2 228 95.2
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 1.5e-103 379.8 224 94.6
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 7.5e-100 367.5 226 88.9
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 1.4e-93 346.7 225 84.9
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 3.1e-90 335.5 228 80.3
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 3.5e-89 332.0 228 80.7
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 8.0e-86 320.9 230 78.7
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 1.2e-81 307.0 218 76.6
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 4.6e-81 305.1 169 96.4
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.3e-72 276.9 205 73.2
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 6.8e-69 264.6 177 79.7
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 9.2e-66 254.2 204 63.7
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 1.1e-63 247.3 206 63.1
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 9.5e-63 244.2 204 62.7
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 1.2e-62 243.8 211 64.0
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 1.2e-62 243.8 217 59.4
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 2.8e-62 242.7 203 62.6
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 6.8e-61 238.0 194 63.9
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.5e-60 236.9 206 62.1
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.5e-60 236.9 237 59.1
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.0e-60 236.5 237 58.6
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.6e-60 236.1 216 59.7
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 2.6e-60 236.1 217 59.0
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 4.4e-60 235.3 237 58.2
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 4.4e-60 235.3 232 56.0
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 7.6e-60 234.6 237 58.2
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 7.6e-60 234.6 222 58.6
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 9.9e-60 234.2 225 57.3
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 2.2e-59 233.0 206 62.6
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.2e-59 233.0 207 58.5
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 2.2e-59 233.0 224 56.7
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 2.9e-59 232.6 224 55.8
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 2.9e-59 232.6 209 63.2
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 3.7e-59 232.3 189 63.0
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 3.7e-59 232.3 213 58.2
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 4.9e-59 231.9 208 61.5
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 8.4e-59 231.1 208 62.0
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 4.1e-58 228.8 229 55.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 4.1e-58 228.8 215 58.6
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 9.2e-58 227.6 212 59.4
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 1.6e-57 226.9 204 59.8
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 2.1e-57 226.5 228 55.7
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 2.7e-57 226.1 216 56.9
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 2.3e-56 223.0 217 54.8
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 3.0e-56 222.6 245 55.1
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 5.1e-56 221.9 212 56.1
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 6.6e-56 221.5 219 56.6
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.1e-55 220.7 225 56.0
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.9e-55 219.9 182 62.1
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 3.3e-55 219.2 173 67.6
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 4.3e-55 218.8 241 53.9
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 9.6e-55 217.6 211 56.4
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.6e-54 216.9 209 55.5
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 2.8e-54 216.1 217 54.8
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 3.6e-54 215.7 194 59.8
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 3.6e-54 215.7 230 53.9
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 3.6e-54 215.7 182 63.2
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 6.2e-54 214.9 256 50.4
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 6.2e-54 214.9 176 64.2
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 8.1e-54 214.5 217 54.4
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.4e-53 213.8 218 55.5
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 1.4e-53 213.8 209 57.4
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 1.8e-53 213.4 208 55.8
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 8.9e-53 211.1 207 53.6
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 8.9e-53 211.1 217 55.3
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 2.6e-52 209.5 215 55.8
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 2.6e-52 209.5 194 56.7
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 3.4e-52 209.1 228 52.2
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.3e-51 207.2 232 53.0
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.7e-51 206.8 217 54.4
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 2.9e-51 206.1 224 50.0
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 2.9e-51 206.1 219 53.4
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 2.4e-50 203.0 207 53.6
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 7.1e-50 201.4 174 61.5
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 7.1e-50 201.4 219 52.1
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 2.1e-49 199.9 248 50.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 6.0e-49 198.4 208 56.7
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.0e-48 197.6 195 56.4
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.7e-48 196.8 194 54.6
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 8.7e-48 194.5 200 54.0
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 1.2e-44 184.1 187 55.1
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.5e-44 183.7 215 49.8
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 9.3e-42 174.5 162 57.4
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 1.6e-41 173.7 194 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 3.5e-41 172.6 169 53.3
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 2.5e-39 166.4 134 65.7
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.2e-36 157.5 209 45.9
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 2.9e-35 152.9 171 48.0
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 5.5e-34 148.7 217 46.5
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 2.7e-33 146.4 147 54.4
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.5e-31 140.6 154 48.7
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 3.8e-27 125.9 165 38.8
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 1.1e-26 124.4 103 63.1
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 7.1e-26 121.7 331 33.5
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.3e-23 112.5 105 60.0
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.3e-23 112.5 105 60.0
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 3.3e-15 86.3 62 72.6
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 1.3e-14 84.3 172 32.6
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 5.5e-10 68.9 86 47.7
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 1.2e-09 67.8 143 31.5


User provided reference genes

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